Cluster: A41.CMAG_2_CGC35
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A41.CMAG_2
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A41_contig_166 | A41_contig_166_2377 | 2695917 | 2697473 | - | 2.A.17.1.7 |
| pfam | A41_contig_166 | A41_contig_166_2378 | 2697650 | 2698138 | - | tRNA_edit |
| pfam | A41_contig_166 | A41_contig_166_2379 | 2698166 | 2701015 | - | UvrA_DNA-bind | UvrA_inter |
| CAZyme | A41_contig_166 | A41_contig_166_2380 | 2701075 | 2702853 | + | CBM50 | CBM50 | CBM50 |
Gene ID: A41_contig_166_2377
Type: TC
Location: 2695917 - 2697473 (-)
Type: TC
Location: 2695917 - 2697473 (-)
Gene ID: A41_contig_166_2378
Type: pfam
Location: 2697650 - 2698138 (-)
Type: pfam
Location: 2697650 - 2698138 (-)
Gene ID: A41_contig_166_2379
Type: pfam
Location: 2698166 - 2701015 (-)
Type: pfam
Location: 2698166 - 2701015 (-)
Gene ID: A41_contig_166_2380
Type: CAZyme
Location: 2701075 - 2702853 (+)
Type: CAZyme
Location: 2701075 - 2702853 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola coprocola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A41_contig_166_2377 | vegetarian > vegan | 1.16788 | 0.01450 |
| A41_contig_166_2378 | vegetarian > vegan | 1.00019 | 0.01450 |