Cluster: A41.CMAG_2_CGC33
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: A41.CMAG_2
- CGC Family ID: CGCFAM_04399
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A41_contig_166 | A41_contig_166_1818 | 2107468 | 2109132 | - | 4.C.1.1.7 |
| pfam | A41_contig_166 | A41_contig_166_1819 | 2109287 | 2109592 | + | DUF4286 |
| pfam | A41_contig_166 | A41_contig_166_1820 | 2109589 | 2110158 | + | RuvC |
| CAZyme | A41_contig_166 | A41_contig_166_1821 | 2110166 | 2112166 | + | GH13_14 |
| TC | A41_contig_166 | A41_contig_166_1822 | 2112179 | 2113630 | + | 3.A.1.130.1 |
| TC | A41_contig_166 | A41_contig_166_1823 | 2113795 | 2115063 | + | 2.A.1.10.1 |
Gene ID: A41_contig_166_1818
Type: TC
Location: 2107468 - 2109132 (-)
Type: TC
Location: 2107468 - 2109132 (-)
Gene ID: A41_contig_166_1819
Type: pfam
Location: 2109287 - 2109592 (+)
Type: pfam
Location: 2109287 - 2109592 (+)
Gene ID: A41_contig_166_1820
Type: pfam
Location: 2109589 - 2110158 (+)
Type: pfam
Location: 2109589 - 2110158 (+)
Gene ID: A41_contig_166_1821
Type: CAZyme
Location: 2110166 - 2112166 (+)
Type: CAZyme
Location: 2110166 - 2112166 (+)
Gene ID: A41_contig_166_1822
Type: TC
Location: 2112179 - 2113630 (+)
Type: TC
Location: 2112179 - 2113630 (+)
Gene ID: A41_contig_166_1823
Type: TC
Location: 2113795 - 2115063 (+)
Type: TC
Location: 2113795 - 2115063 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola coprocola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A41_contig_166_1821 | vegetarian > vegan | 1.10977 | 0.01450 |
| A41_contig_166_1823 | vegetarian > vegan | 1.58628 | 0.01450 |