Cluster: A41.CMAG_2_CGC26
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: A41.CMAG_2
- CGC Family ID: CGCFAM_01889
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A41_contig_166 | A41_contig_166_1424 | 1681255 | 1684401 | + | 1.B.14.6.13 |
| pfam | A41_contig_166 | A41_contig_166_1425 | 1684420 | 1686414 | + | SusD-like | SusD-like | SusD-like_2 | SusD-like_2 |
| CAZyme | A41_contig_166 | A41_contig_166_1426 | 1686592 | 1687938 | + | GH29 |
| CAZyme | A41_contig_166 | A41_contig_166_1427 | 1687950 | 1689020 | + | CBM9 |
| pfam | A41_contig_166 | A41_contig_166_1428 | 1689039 | 1690334 | + | N-glycanase_N | N-glycanase_C |
| TC | A41_contig_166 | A41_contig_166_1429 | 1690393 | 1691136 | - | 9.B.158.1.1 |
| TC | A41_contig_166 | A41_contig_166_1430 | 1691192 | 1691869 | - | 2.A.115.2.8 |
| pfam | A41_contig_166 | A41_contig_166_1431 | 1691998 | 1692300 | + | Acetyltransf_CG |
| pfam | A41_contig_166 | A41_contig_166_1432 | 1692203 | 1692754 | - | DUF2007 |
| TC | A41_contig_166 | A41_contig_166_1433 | 1692767 | 1694893 | - | 2.A.36.7.6 |
Gene ID: A41_contig_166_1424
Type: TC
Location: 1681255 - 1684401 (+)
Type: TC
Location: 1681255 - 1684401 (+)
Gene ID: A41_contig_166_1425
Type: pfam
Location: 1684420 - 1686414 (+)
Type: pfam
Location: 1684420 - 1686414 (+)
Gene ID: A41_contig_166_1426
Type: CAZyme
Location: 1686592 - 1687938 (+)
Type: CAZyme
Location: 1686592 - 1687938 (+)
Gene ID: A41_contig_166_1427
Type: CAZyme
Location: 1687950 - 1689020 (+)
Type: CAZyme
Location: 1687950 - 1689020 (+)
Gene ID: A41_contig_166_1428
Type: pfam
Location: 1689039 - 1690334 (+)
Type: pfam
Location: 1689039 - 1690334 (+)
Gene ID: A41_contig_166_1429
Type: TC
Location: 1690393 - 1691136 (-)
Type: TC
Location: 1690393 - 1691136 (-)
Gene ID: A41_contig_166_1430
Type: TC
Location: 1691192 - 1691869 (-)
Type: TC
Location: 1691192 - 1691869 (-)
Gene ID: A41_contig_166_1431
Type: pfam
Location: 1691998 - 1692300 (+)
Type: pfam
Location: 1691998 - 1692300 (+)
Gene ID: A41_contig_166_1432
Type: pfam
Location: 1692203 - 1692754 (-)
Type: pfam
Location: 1692203 - 1692754 (-)
Gene ID: A41_contig_166_1433
Type: TC
Location: 1692767 - 1694893 (-)
Type: TC
Location: 1692767 - 1694893 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola coprocola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A41_contig_166_1429 | vegetarian > omnivore | 1.01146 | 0.03780 |
| A41_contig_166_1431 | vegetarian > omnivore | 1.38018 | 0.03780 |
| A41_contig_166_1432 | vegetarian > omnivore | 1.11285 | 0.03780 |