Cluster: A41.CMAG_2_CGC20
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: A41.CMAG_2
- CGC Family ID: CGCFAM_04397
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A41_contig_166 | A41_contig_166_996 | 1194653 | 1197535 | + | GH2 |
| TC | A41_contig_166 | A41_contig_166_997 | 1197634 | 1199022 | + | 3.A.1.11.8 |
| TC | A41_contig_166 | A41_contig_166_998 | 1199033 | 1199833 | + | 3.A.1.11.8 |
| TC | A41_contig_166 | A41_contig_166_999 | 1199827 | 1200618 | + | 3.A.1.11.8 |
| STP | A41_contig_166 | A41_contig_166_1000 | 1200657 | 1201982 | + | SBP_bac_1 |
| NULL(UNKNOWN) | A41_contig_166 | A41_contig_166_1001 | 1202092 | 1203039 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A41_contig_166 | A41_contig_166_1002 | 1203079 | 1205010 | + | GT51 |
| pfam | A41_contig_166 | A41_contig_166_1003 | 1205019 | 1205501 | - | Acetyltransf_1 | FR47 | Acetyltransf_3 | Acetyltransf_4 | Acetyltransf_7 | Acetyltransf_10 |
| CAZyme | A41_contig_166 | A41_contig_166_1004 | 1205729 | 1208326 | - | GH3 |
Gene ID: A41_contig_166_996
Type: CAZyme
Location: 1194653 - 1197535 (+)
Type: CAZyme
Location: 1194653 - 1197535 (+)
Gene ID: A41_contig_166_997
Type: TC
Location: 1197634 - 1199022 (+)
Type: TC
Location: 1197634 - 1199022 (+)
Gene ID: A41_contig_166_998
Type: TC
Location: 1199033 - 1199833 (+)
Type: TC
Location: 1199033 - 1199833 (+)
Gene ID: A41_contig_166_999
Type: TC
Location: 1199827 - 1200618 (+)
Type: TC
Location: 1199827 - 1200618 (+)
Gene ID: A41_contig_166_1000
Type: STP
Location: 1200657 - 1201982 (+)
Type: STP
Location: 1200657 - 1201982 (+)
Gene ID: A41_contig_166_1001
Type:
Location: 1202092 - 1203039 (+)
Type:
Location: 1202092 - 1203039 (+)
Gene ID: A41_contig_166_1002
Type: CAZyme
Location: 1203079 - 1205010 (+)
Type: CAZyme
Location: 1203079 - 1205010 (+)
Gene ID: A41_contig_166_1003
Type: pfam
Location: 1205019 - 1205501 (-)
Type: pfam
Location: 1205019 - 1205501 (-)
Gene ID: A41_contig_166_1004
Type: CAZyme
Location: 1205729 - 1208326 (-)
Type: CAZyme
Location: 1205729 - 1208326 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola coprocola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.