Cluster: A41.CMAG_2_CGC10
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: A41.CMAG_2
- CGC Family ID: CGCFAM_06739
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A41_contig_166 | A41_contig_166_417 | 542014 | 542829 | - | 9.B.2.1.5 |
| pfam | A41_contig_166 | A41_contig_166_418 | 542846 | 543286 | - | RHS_repeat | DUF3836 |
| CAZyme | A41_contig_166 | A41_contig_166_419 | 543569 | 545677 | + | GH97 |
| pfam | A41_contig_166 | A41_contig_166_420 | 545765 | 546691 | - | Flavokinase | FAD_syn |
| pfam | A41_contig_166 | A41_contig_166_421 | 546700 | 547314 | - | Hydrolase | HAD_2 |
| TC | A41_contig_166 | A41_contig_166_422 | 547342 | 549969 | - | 3.A.3.2.39 |
| NULL(UNKNOWN) | A41_contig_166 | A41_contig_166_423 | 550246 | 550413 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A41_contig_166 | A41_contig_166_424 | 550441 | 551604 | - | BT_3987-like_N | Laminin_G_3 |
| CAZyme | A41_contig_166 | A41_contig_166_425 | 551629 | 552726 | - | GH18 |
| TC | A41_contig_166 | A41_contig_166_426 | 552754 | 554376 | - | 8.A.46.2.2 |
| TC | A41_contig_166 | A41_contig_166_427 | 554395 | 557730 | - | 1.B.14.6.13 |
| STP | A41_contig_166 | A41_contig_166_428 | 557897 | 558889 | - | FecR |
| STP | A41_contig_166 | A41_contig_166_429 | 558972 | 559547 | - | Sigma70_r2 | Sigma70_r4_2 |
| TC | A41_contig_166 | A41_contig_166_430 | 559732 | 562452 | + | 1.B.14.6.13 |
Gene ID: A41_contig_166_417
Type: TC
Location: 542014 - 542829 (-)
Type: TC
Location: 542014 - 542829 (-)
Gene ID: A41_contig_166_418
Type: pfam
Location: 542846 - 543286 (-)
Type: pfam
Location: 542846 - 543286 (-)
Gene ID: A41_contig_166_419
Type: CAZyme
Location: 543569 - 545677 (+)
Type: CAZyme
Location: 543569 - 545677 (+)
Gene ID: A41_contig_166_420
Type: pfam
Location: 545765 - 546691 (-)
Type: pfam
Location: 545765 - 546691 (-)
Gene ID: A41_contig_166_421
Type: pfam
Location: 546700 - 547314 (-)
Type: pfam
Location: 546700 - 547314 (-)
Gene ID: A41_contig_166_422
Type: TC
Location: 547342 - 549969 (-)
Type: TC
Location: 547342 - 549969 (-)
Gene ID: A41_contig_166_423
Type:
Location: 550246 - 550413 (+)
Type:
Location: 550246 - 550413 (+)
Gene ID: A41_contig_166_424
Type: pfam
Location: 550441 - 551604 (-)
Type: pfam
Location: 550441 - 551604 (-)
Gene ID: A41_contig_166_425
Type: CAZyme
Location: 551629 - 552726 (-)
Type: CAZyme
Location: 551629 - 552726 (-)
Gene ID: A41_contig_166_426
Type: TC
Location: 552754 - 554376 (-)
Type: TC
Location: 552754 - 554376 (-)
Gene ID: A41_contig_166_427
Type: TC
Location: 554395 - 557730 (-)
Type: TC
Location: 554395 - 557730 (-)
Gene ID: A41_contig_166_428
Type: STP
Location: 557897 - 558889 (-)
Type: STP
Location: 557897 - 558889 (-)
Gene ID: A41_contig_166_429
Type: STP
Location: 558972 - 559547 (-)
Type: STP
Location: 558972 - 559547 (-)
Gene ID: A41_contig_166_430
Type: TC
Location: 559732 - 562452 (+)
Type: TC
Location: 559732 - 562452 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola coprocola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A41_contig_166_420 | vegetarian > omnivore | 1.08183 | 0.03780 |
| A41_contig_166_424 | vegetarian > omnivore | 1.00172 | 0.03780 |