Cluster: A31.CMAG_2_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: A31.CMAG_2
- CGC Family ID: CGCFAM_01907
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A31_contig_998 | A31_contig_998_825 | 857836 | 860004 | - | GT2 |
| pfam | A31_contig_998 | A31_contig_998_826 | 860100 | 860936 | - | Flagellin_N | Flagellin_C |
| CAZyme | A31_contig_998 | A31_contig_998_827 | 861125 | 862171 | + | GT2 |
| pfam | A31_contig_998 | A31_contig_998_828 | 862250 | 863989 | + | NTP_transferase | Choline_kinase | APH | NTP_transf_3 | HTH_24 |
| pfam | A31_contig_998 | A31_contig_998_829 | 863986 | 864714 | + | NTP_transferase | NTP_transf_3 |
| TC | A31_contig_998 | A31_contig_998_830 | 864711 | 866219 | + | 2.A.15.2.3 |
Gene ID: A31_contig_998_825
Type: CAZyme
Location: 857836 - 860004 (-)
Type: CAZyme
Location: 857836 - 860004 (-)
Gene ID: A31_contig_998_826
Type: pfam
Location: 860100 - 860936 (-)
Type: pfam
Location: 860100 - 860936 (-)
Gene ID: A31_contig_998_827
Type: CAZyme
Location: 861125 - 862171 (+)
Type: CAZyme
Location: 861125 - 862171 (+)
Gene ID: A31_contig_998_828
Type: pfam
Location: 862250 - 863989 (+)
Type: pfam
Location: 862250 - 863989 (+)
Gene ID: A31_contig_998_829
Type: pfam
Location: 863986 - 864714 (+)
Type: pfam
Location: 863986 - 864714 (+)
Gene ID: A31_contig_998_830
Type: TC
Location: 864711 - 866219 (+)
Type: TC
Location: 864711 - 866219 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Ligilactobacillus
Species
Ligilactobacillus ruminis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.