Cluster: A31.CMAG_2_CGC5
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate: alpha-glucan
- Genome ID: A31.CMAG_2
- CGC Family ID: CGCFAM_00004
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A31_contig_998 | A31_contig_998_782 | 807788 | 808543 | - | 3.A.1.7.5 |
| TC | A31_contig_998 | A31_contig_998_783 | 808552 | 809361 | - | 3.A.1.7.5 |
| TC | A31_contig_998 | A31_contig_998_784 | 809366 | 810259 | - | 3.A.1.7.5 |
| TC | A31_contig_998 | A31_contig_998_785 | 810260 | 811177 | - | 3.A.1.7.5 |
| STP | A31_contig_998 | A31_contig_998_786 | 811164 | 812051 | - | SBP_bac_1 |
| CAZyme | A31_contig_998 | A31_contig_998_787 | 813261 | 815060 | - | GH13_39 |
| CAZyme | A31_contig_998 | A31_contig_998_788 | 815041 | 817479 | - | GT35 |
| CAZyme | A31_contig_998 | A31_contig_998_789 | 817506 | 818939 | - | GT5 |
| pfam | A31_contig_998 | A31_contig_998_790 | 818945 | 820075 | - | NTP_transferase | Hexapep_GlmU |
| pfam | A31_contig_998 | A31_contig_998_791 | 820080 | 821252 | - | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | A31_contig_998 | A31_contig_998_792 | 821267 | 823288 | - | CBM48 | GH13_9 |
Gene ID: A31_contig_998_782
Type: TC
Location: 807788 - 808543 (-)
Type: TC
Location: 807788 - 808543 (-)
Gene ID: A31_contig_998_783
Type: TC
Location: 808552 - 809361 (-)
Type: TC
Location: 808552 - 809361 (-)
Gene ID: A31_contig_998_784
Type: TC
Location: 809366 - 810259 (-)
Type: TC
Location: 809366 - 810259 (-)
Gene ID: A31_contig_998_785
Type: TC
Location: 810260 - 811177 (-)
Type: TC
Location: 810260 - 811177 (-)
Gene ID: A31_contig_998_786
Type: STP
Location: 811164 - 812051 (-)
Type: STP
Location: 811164 - 812051 (-)
Gene ID: A31_contig_998_787
Type: CAZyme
Location: 813261 - 815060 (-)
Type: CAZyme
Location: 813261 - 815060 (-)
Gene ID: A31_contig_998_788
Type: CAZyme
Location: 815041 - 817479 (-)
Type: CAZyme
Location: 815041 - 817479 (-)
Gene ID: A31_contig_998_789
Type: CAZyme
Location: 817506 - 818939 (-)
Type: CAZyme
Location: 817506 - 818939 (-)
Gene ID: A31_contig_998_790
Type: pfam
Location: 818945 - 820075 (-)
Type: pfam
Location: 818945 - 820075 (-)
Gene ID: A31_contig_998_791
Type: pfam
Location: 820080 - 821252 (-)
Type: pfam
Location: 820080 - 821252 (-)
Gene ID: A31_contig_998_792
Type: CAZyme
Location: 821267 - 823288 (-)
Type: CAZyme
Location: 821267 - 823288 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Ligilactobacillus
Species
Ligilactobacillus ruminis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.