Cluster: A31.CMAG_2_CGC17
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: A31.CMAG_2
- CGC Family ID: CGCFAM_00348
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A31_contig_998 | A31_contig_998_1423 | 1541290 | 1542258 | + | GT2 |
| CAZyme | A31_contig_998 | A31_contig_998_1424 | 1542296 | 1543216 | - | GT2 |
| pfam | A31_contig_998 | A31_contig_998_1425 | 1543218 | 1544042 | - | LicD |
| CAZyme | A31_contig_998 | A31_contig_998_1426 | 1544068 | 1544865 | - | GT111 |
| NULL(UNKNOWN) | A31_contig_998 | A31_contig_998_1427 | 1544867 | 1546084 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A31_contig_998 | A31_contig_998_1428 | 1546098 | 1547549 | - | 2.A.66.2.16 |
| STP | A31_contig_998 | A31_contig_998_1429 | 1547824 | 1548939 | + | Pyr_redox |
| CAZyme | A31_contig_998 | A31_contig_998_1430 | 1548966 | 1549745 | + | GT111 |
| TC | A31_contig_998 | A31_contig_998_1431 | 1549780 | 1551231 | + | 9.B.18.1.2 |
| CAZyme | A31_contig_998 | A31_contig_998_1432 | 1551291 | 1552274 | + | GT2 |
| TC | A31_contig_998 | A31_contig_998_1433 | 1552481 | 1554352 | - | 3.A.3.25.3 |
| TF | A31_contig_998 | A31_contig_998_1434 | 1554643 | 1555080 | + | HTH_3 |
| TC | A31_contig_998 | A31_contig_998_1435 | 1555058 | 1555894 | + | 2.A.115.1.2 |
| TC | A31_contig_998 | A31_contig_998_1436 | 1555983 | 1556711 | + | 2.A.109.1.3 |
Gene ID: A31_contig_998_1423
Type: CAZyme
Location: 1541290 - 1542258 (+)
Type: CAZyme
Location: 1541290 - 1542258 (+)
Gene ID: A31_contig_998_1424
Type: CAZyme
Location: 1542296 - 1543216 (-)
Type: CAZyme
Location: 1542296 - 1543216 (-)
Gene ID: A31_contig_998_1425
Type: pfam
Location: 1543218 - 1544042 (-)
Type: pfam
Location: 1543218 - 1544042 (-)
Gene ID: A31_contig_998_1426
Type: CAZyme
Location: 1544068 - 1544865 (-)
Type: CAZyme
Location: 1544068 - 1544865 (-)
Gene ID: A31_contig_998_1427
Type:
Location: 1544867 - 1546084 (-)
Type:
Location: 1544867 - 1546084 (-)
Gene ID: A31_contig_998_1428
Type: TC
Location: 1546098 - 1547549 (-)
Type: TC
Location: 1546098 - 1547549 (-)
Gene ID: A31_contig_998_1429
Type: STP
Location: 1547824 - 1548939 (+)
Type: STP
Location: 1547824 - 1548939 (+)
Gene ID: A31_contig_998_1430
Type: CAZyme
Location: 1548966 - 1549745 (+)
Type: CAZyme
Location: 1548966 - 1549745 (+)
Gene ID: A31_contig_998_1431
Type: TC
Location: 1549780 - 1551231 (+)
Type: TC
Location: 1549780 - 1551231 (+)
Gene ID: A31_contig_998_1432
Type: CAZyme
Location: 1551291 - 1552274 (+)
Type: CAZyme
Location: 1551291 - 1552274 (+)
Gene ID: A31_contig_998_1433
Type: TC
Location: 1552481 - 1554352 (-)
Type: TC
Location: 1552481 - 1554352 (-)
Gene ID: A31_contig_998_1434
Type: TF
Location: 1554643 - 1555080 (+)
Type: TF
Location: 1554643 - 1555080 (+)
Gene ID: A31_contig_998_1435
Type: TC
Location: 1555058 - 1555894 (+)
Type: TC
Location: 1555058 - 1555894 (+)
Gene ID: A31_contig_998_1436
Type: TC
Location: 1555983 - 1556711 (+)
Type: TC
Location: 1555983 - 1556711 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Ligilactobacillus
Species
Ligilactobacillus ruminis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.