Cluster: A31.CMAG_2_CGC15
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: A31.CMAG_2
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A31_contig_998 | A31_contig_998_1277 | 1363902 | 1365275 | - | 2.A.1.3.30 |
| TC | A31_contig_998 | A31_contig_998_1278 | 1365292 | 1366647 | - | 2.A.66.1.13 |
| TC | A31_contig_998 | A31_contig_998_1279 | 1366932 | 1367600 | + | 9.B.120.1.2 |
| NULL(UNKNOWN) | A31_contig_998 | A31_contig_998_1280 | 1367960 | 1368634 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A31_contig_998 | A31_contig_998_1281 | 1368932 | 1370842 | - | 1.C.39.4.5 |
| pfam | A31_contig_998 | A31_contig_998_1282 | 1370851 | 1372239 | - | MMR_HSR1 | FeoB_N | TrmE_N | MnmE_helical |
| TF | A31_contig_998 | A31_contig_998_1283 | 1372396 | 1372806 | - | HTH_3 |
| CAZyme | A31_contig_998 | A31_contig_998_1284 | 1373461 | 1374948 | - | GH1 |
| pfam | A31_contig_998 | A31_contig_998_1285 | 1374968 | 1375558 | - | His_Phos_1 |
| TC | A31_contig_998 | A31_contig_998_1286 | 1376025 | 1376369 | - | 4.A.3.2.4 |
| TC | A31_contig_998 | A31_contig_998_1287 | 1376386 | 1376703 | - | 4.A.3.2.4 |
| pfam | A31_contig_998 | A31_contig_998_1288 | 1376947 | 1378740 | - | DUF2207 | DUF2207_C |
| CAZyme | A31_contig_998 | A31_contig_998_1289 | 1378931 | 1380373 | - | GH1 |
Gene ID: A31_contig_998_1277
Type: TC
Location: 1363902 - 1365275 (-)
Type: TC
Location: 1363902 - 1365275 (-)
Gene ID: A31_contig_998_1278
Type: TC
Location: 1365292 - 1366647 (-)
Type: TC
Location: 1365292 - 1366647 (-)
Gene ID: A31_contig_998_1279
Type: TC
Location: 1366932 - 1367600 (+)
Type: TC
Location: 1366932 - 1367600 (+)
Gene ID: A31_contig_998_1280
Type:
Location: 1367960 - 1368634 (-)
Type:
Location: 1367960 - 1368634 (-)
Gene ID: A31_contig_998_1281
Type: TC
Location: 1368932 - 1370842 (-)
Type: TC
Location: 1368932 - 1370842 (-)
Gene ID: A31_contig_998_1282
Type: pfam
Location: 1370851 - 1372239 (-)
Type: pfam
Location: 1370851 - 1372239 (-)
Gene ID: A31_contig_998_1283
Type: TF
Location: 1372396 - 1372806 (-)
Type: TF
Location: 1372396 - 1372806 (-)
Gene ID: A31_contig_998_1284
Type: CAZyme
Location: 1373461 - 1374948 (-)
Type: CAZyme
Location: 1373461 - 1374948 (-)
Gene ID: A31_contig_998_1285
Type: pfam
Location: 1374968 - 1375558 (-)
Type: pfam
Location: 1374968 - 1375558 (-)
Gene ID: A31_contig_998_1286
Type: TC
Location: 1376025 - 1376369 (-)
Type: TC
Location: 1376025 - 1376369 (-)
Gene ID: A31_contig_998_1287
Type: TC
Location: 1376386 - 1376703 (-)
Type: TC
Location: 1376386 - 1376703 (-)
Gene ID: A31_contig_998_1288
Type: pfam
Location: 1376947 - 1378740 (-)
Type: pfam
Location: 1376947 - 1378740 (-)
Gene ID: A31_contig_998_1289
Type: CAZyme
Location: 1378931 - 1380373 (-)
Type: CAZyme
Location: 1378931 - 1380373 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Ligilactobacillus
Species
Ligilactobacillus ruminis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.