Cluster: A31.CMAG_2_CGC12
🧬 Cluster Details
- Gene Count: 31
- CAZyme Count: 6
- Substrate:
- Genome ID: A31.CMAG_2
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A31_contig_998 | A31_contig_998_1176 | 1236613 | 1238064 | + | CBM50 | CBM50 |
| NULL(UNKNOWN) | A31_contig_998 | A31_contig_998_1177 | 1238093 | 1238398 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A31_contig_998 | A31_contig_998_1178 | 1238920 | 1239606 | - | 3.A.1.3.15 |
| STP | A31_contig_998 | A31_contig_998_1179 | 1239622 | 1240452 | - | SBP_bac_3 |
| CAZyme | A31_contig_998 | A31_contig_998_1180 | 1242015 | 1243838 | - | CBM34 | GH13_20 |
| NULL(UNKNOWN) | A31_contig_998 | A31_contig_998_1181 | 1243892 | 1244701 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A31_contig_998 | A31_contig_998_1182 | 1244907 | 1245782 | - | 3.A.1.1.26 |
| TC | A31_contig_998 | A31_contig_998_1183 | 1245791 | 1247074 | - | 3.A.1.1.26 |
| NULL(UNKNOWN) | A31_contig_998 | A31_contig_998_1184 | 1247156 | 1247662 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A31_contig_998 | A31_contig_998_1185 | 1247517 | 1248767 | - | 3.A.1.1.26 |
| CAZyme | A31_contig_998 | A31_contig_998_1186 | 1249198 | 1250961 | - | CBM34 | GH13_20 |
| CAZyme | A31_contig_998 | A31_contig_998_1187 | 1250980 | 1252659 | - | GH13_31 |
| TF | A31_contig_998 | A31_contig_998_1188 | 1252769 | 1253740 | - | LacI |
| TC | A31_contig_998 | A31_contig_998_1189 | 1253987 | 1255912 | - | 4.A.1.2.12 |
| CAZyme | A31_contig_998 | A31_contig_998_1190 | 1256193 | 1257683 | + | GH32 |
| TF | A31_contig_998 | A31_contig_998_1191 | 1257709 | 1258710 | + | LacI |
| pfam | A31_contig_998 | A31_contig_998_1192 | 1259506 | 1260324 | - | Exo_endo_phos |
| TC | A31_contig_998 | A31_contig_998_1193 | 1260388 | 1262580 | - | 4.A.1.1.11 |
| TC | A31_contig_998 | A31_contig_998_1194 | 1262995 | 1264887 | + | 4.A.1.2.6 |
| CAZyme | A31_contig_998 | A31_contig_998_1195 | 1264907 | 1266373 | + | GH1 |
| NULL(UNKNOWN) | A31_contig_998 | A31_contig_998_1196 | 1269225 | 1269443 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A31_contig_998 | A31_contig_998_1197 | 1272856 | 1273236 | - | DUF956 |
| TC | A31_contig_998 | A31_contig_998_1198 | 1273336 | 1274250 | - | 4.A.6.1.15 |
| TC | A31_contig_998 | A31_contig_998_1199 | 1274264 | 1275073 | - | 4.A.6.1.15 |
| TC | A31_contig_998 | A31_contig_998_1200 | 1275108 | 1276094 | - | 4.A.6.1.10 |
| TC | A31_contig_998 | A31_contig_998_1201 | 1276125 | 1276664 | - | 4.A.6.1.16 |
| TC | A31_contig_998 | A31_contig_998_1202 | 1276630 | 1277049 | - | 4.A.6.1.6 |
| TC | A31_contig_998 | A31_contig_998_1203 | 1277354 | 1280188 | - | 3.A.23.1.1 |
| TC | A31_contig_998 | A31_contig_998_1204 | 1280372 | 1282006 | - | 3.A.1.5.25 |
| pfam | A31_contig_998 | A31_contig_998_1205 | 1282196 | 1283950 | + | ABC1 |
| TC | A31_contig_998 | A31_contig_998_1206 | 1284093 | 1285739 | - | 3.A.1.5.25 |
Gene ID: A31_contig_998_1176
Type: CAZyme
Location: 1236613 - 1238064 (+)
Type: CAZyme
Location: 1236613 - 1238064 (+)
Gene ID: A31_contig_998_1177
Type:
Location: 1238093 - 1238398 (+)
Type:
Location: 1238093 - 1238398 (+)
Gene ID: A31_contig_998_1178
Type: TC
Location: 1238920 - 1239606 (-)
Type: TC
Location: 1238920 - 1239606 (-)
Gene ID: A31_contig_998_1179
Type: STP
Location: 1239622 - 1240452 (-)
Type: STP
Location: 1239622 - 1240452 (-)
Gene ID: A31_contig_998_1180
Type: CAZyme
Location: 1242015 - 1243838 (-)
Type: CAZyme
Location: 1242015 - 1243838 (-)
Gene ID: A31_contig_998_1181
Type:
Location: 1243892 - 1244701 (-)
Type:
Location: 1243892 - 1244701 (-)
Gene ID: A31_contig_998_1182
Type: TC
Location: 1244907 - 1245782 (-)
Type: TC
Location: 1244907 - 1245782 (-)
Gene ID: A31_contig_998_1183
Type: TC
Location: 1245791 - 1247074 (-)
Type: TC
Location: 1245791 - 1247074 (-)
Gene ID: A31_contig_998_1184
Type:
Location: 1247156 - 1247662 (+)
Type:
Location: 1247156 - 1247662 (+)
Gene ID: A31_contig_998_1185
Type: TC
Location: 1247517 - 1248767 (-)
Type: TC
Location: 1247517 - 1248767 (-)
Gene ID: A31_contig_998_1186
Type: CAZyme
Location: 1249198 - 1250961 (-)
Type: CAZyme
Location: 1249198 - 1250961 (-)
Gene ID: A31_contig_998_1187
Type: CAZyme
Location: 1250980 - 1252659 (-)
Type: CAZyme
Location: 1250980 - 1252659 (-)
Gene ID: A31_contig_998_1188
Type: TF
Location: 1252769 - 1253740 (-)
Type: TF
Location: 1252769 - 1253740 (-)
Gene ID: A31_contig_998_1189
Type: TC
Location: 1253987 - 1255912 (-)
Type: TC
Location: 1253987 - 1255912 (-)
Gene ID: A31_contig_998_1190
Type: CAZyme
Location: 1256193 - 1257683 (+)
Type: CAZyme
Location: 1256193 - 1257683 (+)
Gene ID: A31_contig_998_1191
Type: TF
Location: 1257709 - 1258710 (+)
Type: TF
Location: 1257709 - 1258710 (+)
Gene ID: A31_contig_998_1192
Type: pfam
Location: 1259506 - 1260324 (-)
Type: pfam
Location: 1259506 - 1260324 (-)
Gene ID: A31_contig_998_1193
Type: TC
Location: 1260388 - 1262580 (-)
Type: TC
Location: 1260388 - 1262580 (-)
Gene ID: A31_contig_998_1194
Type: TC
Location: 1262995 - 1264887 (+)
Type: TC
Location: 1262995 - 1264887 (+)
Gene ID: A31_contig_998_1195
Type: CAZyme
Location: 1264907 - 1266373 (+)
Type: CAZyme
Location: 1264907 - 1266373 (+)
Gene ID: A31_contig_998_1196
Type:
Location: 1269225 - 1269443 (-)
Type:
Location: 1269225 - 1269443 (-)
Gene ID: A31_contig_998_1197
Type: pfam
Location: 1272856 - 1273236 (-)
Type: pfam
Location: 1272856 - 1273236 (-)
Gene ID: A31_contig_998_1198
Type: TC
Location: 1273336 - 1274250 (-)
Type: TC
Location: 1273336 - 1274250 (-)
Gene ID: A31_contig_998_1199
Type: TC
Location: 1274264 - 1275073 (-)
Type: TC
Location: 1274264 - 1275073 (-)
Gene ID: A31_contig_998_1200
Type: TC
Location: 1275108 - 1276094 (-)
Type: TC
Location: 1275108 - 1276094 (-)
Gene ID: A31_contig_998_1201
Type: TC
Location: 1276125 - 1276664 (-)
Type: TC
Location: 1276125 - 1276664 (-)
Gene ID: A31_contig_998_1202
Type: TC
Location: 1276630 - 1277049 (-)
Type: TC
Location: 1276630 - 1277049 (-)
Gene ID: A31_contig_998_1203
Type: TC
Location: 1277354 - 1280188 (-)
Type: TC
Location: 1277354 - 1280188 (-)
Gene ID: A31_contig_998_1204
Type: TC
Location: 1280372 - 1282006 (-)
Type: TC
Location: 1280372 - 1282006 (-)
Gene ID: A31_contig_998_1205
Type: pfam
Location: 1282196 - 1283950 (+)
Type: pfam
Location: 1282196 - 1283950 (+)
Gene ID: A31_contig_998_1206
Type: TC
Location: 1284093 - 1285739 (-)
Type: TC
Location: 1284093 - 1285739 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Ligilactobacillus
Species
Ligilactobacillus ruminis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.