Cluster: A171.bin_4_CGC9
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: A171.bin_4
- CGC Family ID: CGCFAM_06690
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A171_contig_113 | A171_contig_113_885 | 992827 | 993537 | + | 3.A.1.132.4 |
| NULL(UNKNOWN) | A171_contig_113 | A171_contig_113_886 | 993534 | 994250 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A171_contig_113 | A171_contig_113_887 | 994366 | 995388 | + | Biotin_lipoyl_2 |
| TC | A171_contig_113 | A171_contig_113_888 | 995375 | 996049 | + | 3.A.1.122.3 |
| TC | A171_contig_113 | A171_contig_113_889 | 996051 | 997247 | + | 3.A.1.122.3 |
| TF | A171_contig_113 | A171_contig_113_890 | 997296 | 998225 | - | LacI |
| TC | A171_contig_113 | A171_contig_113_891 | 998440 | 999798 | + | 2.A.2.6.2 |
| CAZyme | A171_contig_113 | A171_contig_113_892 | 999820 | 1001586 | + | CBM34 | GH13_20 |
| CAZyme | A171_contig_113 | A171_contig_113_893 | 1001605 | 1003866 | + | GH65 |
| pfam | A171_contig_113 | A171_contig_113_894 | 1003868 | 1004539 | + | Hydrolase | HAD_2 |
| TC | A171_contig_113 | A171_contig_113_895 | 1004709 | 1005329 | + | 2.A.87.2.1 |
Gene ID: A171_contig_113_885
Type: TC
Location: 992827 - 993537 (+)
Type: TC
Location: 992827 - 993537 (+)
Gene ID: A171_contig_113_886
Type:
Location: 993534 - 994250 (+)
Type:
Location: 993534 - 994250 (+)
Gene ID: A171_contig_113_887
Type: pfam
Location: 994366 - 995388 (+)
Type: pfam
Location: 994366 - 995388 (+)
Gene ID: A171_contig_113_888
Type: TC
Location: 995375 - 996049 (+)
Type: TC
Location: 995375 - 996049 (+)
Gene ID: A171_contig_113_889
Type: TC
Location: 996051 - 997247 (+)
Type: TC
Location: 996051 - 997247 (+)
Gene ID: A171_contig_113_890
Type: TF
Location: 997296 - 998225 (-)
Type: TF
Location: 997296 - 998225 (-)
Gene ID: A171_contig_113_891
Type: TC
Location: 998440 - 999798 (+)
Type: TC
Location: 998440 - 999798 (+)
Gene ID: A171_contig_113_892
Type: CAZyme
Location: 999820 - 1001586 (+)
Type: CAZyme
Location: 999820 - 1001586 (+)
Gene ID: A171_contig_113_893
Type: CAZyme
Location: 1001605 - 1003866 (+)
Type: CAZyme
Location: 1001605 - 1003866 (+)
Gene ID: A171_contig_113_894
Type: pfam
Location: 1003868 - 1004539 (+)
Type: pfam
Location: 1003868 - 1004539 (+)
Gene ID: A171_contig_113_895
Type: TC
Location: 1004709 - 1005329 (+)
Type: TC
Location: 1004709 - 1005329 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Weissella
Species
Weissella confusa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.