Cluster: A171.bin_4_CGC19
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: A171.bin_4
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A171_contig_113 | A171_contig_113_1604 | 1685752 | 1687677 | - | GH120 |
| NULL(UNKNOWN) | A171_contig_113 | A171_contig_113_1605 | 1687828 | 1687959 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A171_contig_113 | A171_contig_113_1606 | 1688012 | 1689256 | - | ABC2_membrane_3 |
| TC | A171_contig_113 | A171_contig_113_1607 | 1689249 | 1690151 | - | 3.A.1.115.1 |
| NULL(UNKNOWN) | A171_contig_113 | A171_contig_113_1608 | 1690306 | 1690590 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A171_contig_113 | A171_contig_113_1609 | 1690623 | 1693397 | - | 3.A.12.1.1 |
| pfam | A171_contig_113 | A171_contig_113_1610 | 1693439 | 1693954 | - | SpoU_methylase |
| TC | A171_contig_113 | A171_contig_113_1611 | 1694073 | 1695218 | - | 2.A.86.1.8 |
| pfam | A171_contig_113 | A171_contig_113_1612 | 1695283 | 1696308 | - | Lactonase |
| pfam | A171_contig_113 | A171_contig_113_1613 | 1696405 | 1696791 | - | Ribonuc_L-PSP |
| TC | A171_contig_113 | A171_contig_113_1614 | 1696890 | 1697849 | - | 2.A.109.1.2 |
Gene ID: A171_contig_113_1604
Type: CAZyme
Location: 1685752 - 1687677 (-)
Type: CAZyme
Location: 1685752 - 1687677 (-)
Gene ID: A171_contig_113_1605
Type:
Location: 1687828 - 1687959 (+)
Type:
Location: 1687828 - 1687959 (+)
Gene ID: A171_contig_113_1606
Type: pfam
Location: 1688012 - 1689256 (-)
Type: pfam
Location: 1688012 - 1689256 (-)
Gene ID: A171_contig_113_1607
Type: TC
Location: 1689249 - 1690151 (-)
Type: TC
Location: 1689249 - 1690151 (-)
Gene ID: A171_contig_113_1608
Type:
Location: 1690306 - 1690590 (-)
Type:
Location: 1690306 - 1690590 (-)
Gene ID: A171_contig_113_1609
Type: TC
Location: 1690623 - 1693397 (-)
Type: TC
Location: 1690623 - 1693397 (-)
Gene ID: A171_contig_113_1610
Type: pfam
Location: 1693439 - 1693954 (-)
Type: pfam
Location: 1693439 - 1693954 (-)
Gene ID: A171_contig_113_1611
Type: TC
Location: 1694073 - 1695218 (-)
Type: TC
Location: 1694073 - 1695218 (-)
Gene ID: A171_contig_113_1612
Type: pfam
Location: 1695283 - 1696308 (-)
Type: pfam
Location: 1695283 - 1696308 (-)
Gene ID: A171_contig_113_1613
Type: pfam
Location: 1696405 - 1696791 (-)
Type: pfam
Location: 1696405 - 1696791 (-)
Gene ID: A171_contig_113_1614
Type: TC
Location: 1696890 - 1697849 (-)
Type: TC
Location: 1696890 - 1697849 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Weissella
Species
Weissella confusa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.