Cluster: A171.bin_4_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: A171.bin_4
- CGC Family ID: CGCFAM_00003
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A171_contig_113 | A171_contig_113_1002 | 1125467 | 1126426 | + | GT2 |
| TC | A171_contig_113 | A171_contig_113_1003 | 1126413 | 1127951 | + | 2.A.66.1.40 |
| pfam | A171_contig_113 | A171_contig_113_1004 | 1128567 | 1129496 | + | 3Beta_HSD | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| TC | A171_contig_113 | A171_contig_113_1005 | 1129517 | 1130149 | + | 9.B.18.1.3 |
| pfam | A171_contig_113 | A171_contig_113_1006 | 1130511 | 1131521 | + | Stealth_CR2 | Stealth_CR1 |
| CAZyme | A171_contig_113 | A171_contig_113_1007 | 1131518 | 1132663 | + | GT4 |
| CAZyme | A171_contig_113 | A171_contig_113_1008 | 1132667 | 1133419 | + | GT2 |
Gene ID: A171_contig_113_1002
Type: CAZyme
Location: 1125467 - 1126426 (+)
Type: CAZyme
Location: 1125467 - 1126426 (+)
Gene ID: A171_contig_113_1003
Type: TC
Location: 1126413 - 1127951 (+)
Type: TC
Location: 1126413 - 1127951 (+)
Gene ID: A171_contig_113_1004
Type: pfam
Location: 1128567 - 1129496 (+)
Type: pfam
Location: 1128567 - 1129496 (+)
Gene ID: A171_contig_113_1005
Type: TC
Location: 1129517 - 1130149 (+)
Type: TC
Location: 1129517 - 1130149 (+)
Gene ID: A171_contig_113_1006
Type: pfam
Location: 1130511 - 1131521 (+)
Type: pfam
Location: 1130511 - 1131521 (+)
Gene ID: A171_contig_113_1007
Type: CAZyme
Location: 1131518 - 1132663 (+)
Type: CAZyme
Location: 1131518 - 1132663 (+)
Gene ID: A171_contig_113_1008
Type: CAZyme
Location: 1132667 - 1133419 (+)
Type: CAZyme
Location: 1132667 - 1133419 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Weissella
Species
Weissella confusa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.