Cluster: A163.bin_2_CGC25
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate: pectin/galactan
- Genome ID: A163.bin_2
- CGC Family ID: CGCFAM_00031
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A163_contig_23 | A163_contig_23_2248 | 2635489 | 2637417 | - | 3.A.3.5.18 |
| TC | A163_contig_23 | A163_contig_23_2249 | 2637492 | 2638706 | - | 2.A.1.35.1 |
| STP | A163_contig_23 | A163_contig_23_2250 | 2638922 | 2639794 | - | PfkB |
| TC | A163_contig_23 | A163_contig_23_2251 | 2639973 | 2641187 | - | 2.A.1.7.17 |
| pfam | A163_contig_23 | A163_contig_23_2252 | 2641437 | 2643143 | - | SusD_RagB | SusD-like_3 |
| pfam | A163_contig_23 | A163_contig_23_2253 | 2643178 | 2644140 | - | DDE_Tnp_1 | DDE_Tnp_1_3 |
| TC | A163_contig_23 | A163_contig_23_2254 | 2644262 | 2647378 | - | 1.B.14.6.1 |
| TF | A163_contig_23 | A163_contig_23_2255 | 2647549 | 2649753 | - | HTH_AraC | HTH_AraC |
| CAZyme | A163_contig_23 | A163_contig_23_2256 | 2649980 | 2651704 | + | GH32 |
| CAZyme | A163_contig_23 | A163_contig_23_2257 | 2652407 | 2653426 | + | GH53 |
| CAZyme | A163_contig_23 | A163_contig_23_2258 | 2653670 | 2656039 | + | GH2 |
Gene ID: A163_contig_23_2248
Type: TC
Location: 2635489 - 2637417 (-)
Type: TC
Location: 2635489 - 2637417 (-)
Gene ID: A163_contig_23_2249
Type: TC
Location: 2637492 - 2638706 (-)
Type: TC
Location: 2637492 - 2638706 (-)
Gene ID: A163_contig_23_2250
Type: STP
Location: 2638922 - 2639794 (-)
Type: STP
Location: 2638922 - 2639794 (-)
Gene ID: A163_contig_23_2251
Type: TC
Location: 2639973 - 2641187 (-)
Type: TC
Location: 2639973 - 2641187 (-)
Gene ID: A163_contig_23_2252
Type: pfam
Location: 2641437 - 2643143 (-)
Type: pfam
Location: 2641437 - 2643143 (-)
Gene ID: A163_contig_23_2253
Type: pfam
Location: 2643178 - 2644140 (-)
Type: pfam
Location: 2643178 - 2644140 (-)
Gene ID: A163_contig_23_2254
Type: TC
Location: 2644262 - 2647378 (-)
Type: TC
Location: 2644262 - 2647378 (-)
Gene ID: A163_contig_23_2255
Type: TF
Location: 2647549 - 2649753 (-)
Type: TF
Location: 2647549 - 2649753 (-)
Gene ID: A163_contig_23_2256
Type: CAZyme
Location: 2649980 - 2651704 (+)
Type: CAZyme
Location: 2649980 - 2651704 (+)
Gene ID: A163_contig_23_2257
Type: CAZyme
Location: 2652407 - 2653426 (+)
Type: CAZyme
Location: 2652407 - 2653426 (+)
Gene ID: A163_contig_23_2258
Type: CAZyme
Location: 2653670 - 2656039 (+)
Type: CAZyme
Location: 2653670 - 2656039 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella stercorea
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A163_contig_23_2249 | vegetarian > vegan | 2.34287 | 0.02177 |