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Cluster: A15.CMAG_2_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC A15_contig_688 A15_contig_688_542 541302 542174 + 3.A.1.149.1
pfam A15_contig_688 A15_contig_688_543 542171 542782 + ABC2_membrane_5
NULL(UNKNOWN) A15_contig_688 A15_contig_688_544 543014 543307 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme A15_contig_688 A15_contig_688_545 544009 545907 - CBM48 | GH13_9
pfam A15_contig_688 A15_contig_688_546 545966 548569 - TPR_6 | TPR_8
TC A15_contig_688 A15_contig_688_547 548676 550010 - 2.A.86.1.8
Gene ID: A15_contig_688_542
Type: TC
Location: 541302 - 542174 (+)
Gene ID: A15_contig_688_543
Type: pfam
Location: 542171 - 542782 (+)
Gene ID: A15_contig_688_544
Type:
Location: 543014 - 543307 (+)
Gene ID: A15_contig_688_545
Type: CAZyme
Location: 544009 - 545907 (-)
Gene ID: A15_contig_688_546
Type: pfam
Location: 545966 - 548569 (-)
Gene ID: A15_contig_688_547
Type: TC
Location: 548676 - 550010 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
A15_contig_688_542 vegetarian > vegan 1.66819 0.00181
A15_contig_688_543 vegetarian > vegan 1.56659 0.00181
A15_contig_688_547 vegetarian > vegan 1.04670 0.00181

🧭 Explore Read Mapping of CGC

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