Cluster: A15.CMAG_2_CGC6
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: A15.CMAG_2
- CGC Family ID: CGCFAM_06674
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A15_contig_688 | A15_contig_688_290 | 298729 | 300882 | - | GH3 |
| CAZyme | A15_contig_688 | A15_contig_688_291 | 300962 | 302038 | - | GH179 |
| pfam | A15_contig_688 | A15_contig_688_292 | 302070 | 302990 | - | AP_endonuc_2 |
| pfam | A15_contig_688 | A15_contig_688_293 | 303018 | 303896 | - | AP_endonuc_2 |
| CAZyme | A15_contig_688 | A15_contig_688_294 | 303927 | 304994 | - | GH179 |
| TC | A15_contig_688 | A15_contig_688_295 | 305051 | 306760 | - | 3.A.1.1.9 |
| TC | A15_contig_688 | A15_contig_688_296 | 306776 | 307660 | - | 3.A.1.1.9 |
| TC | A15_contig_688 | A15_contig_688_297 | 307673 | 308563 | - | 3.A.1.1.9 |
Gene ID: A15_contig_688_290
Type: CAZyme
Location: 298729 - 300882 (-)
Type: CAZyme
Location: 298729 - 300882 (-)
Gene ID: A15_contig_688_291
Type: CAZyme
Location: 300962 - 302038 (-)
Type: CAZyme
Location: 300962 - 302038 (-)
Gene ID: A15_contig_688_292
Type: pfam
Location: 302070 - 302990 (-)
Type: pfam
Location: 302070 - 302990 (-)
Gene ID: A15_contig_688_293
Type: pfam
Location: 303018 - 303896 (-)
Type: pfam
Location: 303018 - 303896 (-)
Gene ID: A15_contig_688_294
Type: CAZyme
Location: 303927 - 304994 (-)
Type: CAZyme
Location: 303927 - 304994 (-)
Gene ID: A15_contig_688_295
Type: TC
Location: 305051 - 306760 (-)
Type: TC
Location: 305051 - 306760 (-)
Gene ID: A15_contig_688_296
Type: TC
Location: 306776 - 307660 (-)
Type: TC
Location: 306776 - 307660 (-)
Gene ID: A15_contig_688_297
Type: TC
Location: 307673 - 308563 (-)
Type: TC
Location: 307673 - 308563 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia inulinivorans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_688_291 | vegetarian > vegan | 1.15807 | 0.00181 |
| A15_contig_688_292 | vegetarian > vegan | 1.25062 | 0.00181 |
| A15_contig_688_294 | vegetarian > vegan | 1.17419 | 0.00181 |
| A15_contig_688_296 | vegetarian > vegan | 1.09559 | 0.00181 |