Cluster: A15.CMAG_2_CGC42
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: A15.CMAG_2
- CGC Family ID: CGCFAM_00546
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A15_contig_688 | A15_contig_688_3440 | 3616120 | 3617259 | - | 2.A.86.1.3 |
| TC | A15_contig_688 | A15_contig_688_3441 | 3617465 | 3618526 | - | 4.D.2.1.5 |
| NULL(UNKNOWN) | A15_contig_688 | A15_contig_688_3442 | 3618566 | 3619135 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A15_contig_688 | A15_contig_688_3443 | 3619164 | 3620183 | - | GT2 |
| TC | A15_contig_688 | A15_contig_688_3444 | 3620301 | 3621692 | - | 1.A.26.1.1 |
Gene ID: A15_contig_688_3440
Type: TC
Location: 3616120 - 3617259 (-)
Type: TC
Location: 3616120 - 3617259 (-)
Gene ID: A15_contig_688_3441
Type: TC
Location: 3617465 - 3618526 (-)
Type: TC
Location: 3617465 - 3618526 (-)
Gene ID: A15_contig_688_3442
Type:
Location: 3618566 - 3619135 (-)
Type:
Location: 3618566 - 3619135 (-)
Gene ID: A15_contig_688_3443
Type: CAZyme
Location: 3619164 - 3620183 (-)
Type: CAZyme
Location: 3619164 - 3620183 (-)
Gene ID: A15_contig_688_3444
Type: TC
Location: 3620301 - 3621692 (-)
Type: TC
Location: 3620301 - 3621692 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia inulinivorans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_688_3440 | vegetarian > vegan | 1.07427 | 0.00181 |
| A15_contig_688_3441 | vegetarian > vegan | 1.16295 | 0.00181 |
| A15_contig_688_3443 | vegetarian > vegan | 1.06000 | 0.00181 |