Cluster: A15.CMAG_2_CGC41
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: A15.CMAG_2
- CGC Family ID: CGCFAM_01550
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A15_contig_688 | A15_contig_688_3425 | 3593827 | 3594684 | - | 3.A.1.1.4 |
| TC | A15_contig_688 | A15_contig_688_3426 | 3594691 | 3595605 | - | 3.A.1.1.4 |
| NULL(UNKNOWN) | A15_contig_688 | A15_contig_688_3427 | 3595759 | 3597162 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | A15_contig_688 | A15_contig_688_3428 | 3597350 | 3598114 | + | HTH_AraC | HTH_AraC |
| CAZyme | A15_contig_688 | A15_contig_688_3429 | 3598183 | 3600597 | - | GH94 |
| CAZyme | A15_contig_688 | A15_contig_688_3430 | 3600619 | 3603318 | - | GH94 |
| CAZyme | A15_contig_688 | A15_contig_688_3431 | 3603503 | 3607054 | - | CBM4 | CBM4 | CBM4 | GH16_3 |
| pfam | A15_contig_688 | A15_contig_688_3432 | 3607266 | 3607721 | - | Coat_F |
| TF | A15_contig_688 | A15_contig_688_3433 | 3607799 | 3608716 | - | HTH_AraC | HTH_AraC |
| CAZyme | A15_contig_688 | A15_contig_688_3434 | 3609124 | 3610815 | + | GH13_31 |
Gene ID: A15_contig_688_3425
Type: TC
Location: 3593827 - 3594684 (-)
Type: TC
Location: 3593827 - 3594684 (-)
Gene ID: A15_contig_688_3426
Type: TC
Location: 3594691 - 3595605 (-)
Type: TC
Location: 3594691 - 3595605 (-)
Gene ID: A15_contig_688_3427
Type:
Location: 3595759 - 3597162 (-)
Type:
Location: 3595759 - 3597162 (-)
Gene ID: A15_contig_688_3428
Type: TF
Location: 3597350 - 3598114 (+)
Type: TF
Location: 3597350 - 3598114 (+)
Gene ID: A15_contig_688_3429
Type: CAZyme
Location: 3598183 - 3600597 (-)
Type: CAZyme
Location: 3598183 - 3600597 (-)
Gene ID: A15_contig_688_3430
Type: CAZyme
Location: 3600619 - 3603318 (-)
Type: CAZyme
Location: 3600619 - 3603318 (-)
Gene ID: A15_contig_688_3431
Type: CAZyme
Location: 3603503 - 3607054 (-)
Type: CAZyme
Location: 3603503 - 3607054 (-)
Gene ID: A15_contig_688_3432
Type: pfam
Location: 3607266 - 3607721 (-)
Type: pfam
Location: 3607266 - 3607721 (-)
Gene ID: A15_contig_688_3433
Type: TF
Location: 3607799 - 3608716 (-)
Type: TF
Location: 3607799 - 3608716 (-)
Gene ID: A15_contig_688_3434
Type: CAZyme
Location: 3609124 - 3610815 (+)
Type: CAZyme
Location: 3609124 - 3610815 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia inulinivorans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_688_3428 | vegetarian > omnivore | 1.17276 | 0.00079 |
| A15_contig_688_3430 | vegetarian > omnivore | 1.56956 | 0.00079 |
| A15_contig_688_3433 | vegetarian > vegan | 1.44252 | 0.00181 |
| A15_contig_688_3434 | vegetarian > vegan | 1.01024 | 0.00181 |