Cluster: A15.CMAG_2_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: A15.CMAG_2
- CGC Family ID: CGCFAM_04331
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A15_contig_688 | A15_contig_688_239 | 248857 | 251109 | - | GH31_1 |
| NULL(UNKNOWN) | A15_contig_688 | A15_contig_688_240 | 251194 | 251430 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A15_contig_688 | A15_contig_688_241 | 251459 | 252388 | - | 1.A.35.3.2 |
| NULL(UNKNOWN) | A15_contig_688 | A15_contig_688_242 | 252419 | 253384 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A15_contig_688 | A15_contig_688_243 | 253787 | 255391 | + | PEPCK_ATP |
| TC | A15_contig_688 | A15_contig_688_244 | 255489 | 256808 | + | 2.A.66.1.7 |
Gene ID: A15_contig_688_239
Type: CAZyme
Location: 248857 - 251109 (-)
Type: CAZyme
Location: 248857 - 251109 (-)
Gene ID: A15_contig_688_240
Type:
Location: 251194 - 251430 (-)
Type:
Location: 251194 - 251430 (-)
Gene ID: A15_contig_688_241
Type: TC
Location: 251459 - 252388 (-)
Type: TC
Location: 251459 - 252388 (-)
Gene ID: A15_contig_688_242
Type:
Location: 252419 - 253384 (-)
Type:
Location: 252419 - 253384 (-)
Gene ID: A15_contig_688_243
Type: pfam
Location: 253787 - 255391 (+)
Type: pfam
Location: 253787 - 255391 (+)
Gene ID: A15_contig_688_244
Type: TC
Location: 255489 - 256808 (+)
Type: TC
Location: 255489 - 256808 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia inulinivorans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_688_239 | vegetarian > vegan | 1.10827 | 0.00181 |
| A15_contig_688_241 | vegetarian > vegan | 1.13606 | 0.00181 |