Cluster: A15.CMAG_2_CGC39
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: A15.CMAG_2
- CGC Family ID: CGCFAM_02385
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A15_contig_688 | A15_contig_688_3010 | 3169581 | 3171737 | - | 9.A.8.1.6 |
| STP | A15_contig_688 | A15_contig_688_3011 | 3171886 | 3172104 | - | FeoA |
| STP | A15_contig_688 | A15_contig_688_3012 | 3172194 | 3172406 | - | FeoA |
| CAZyme | A15_contig_688 | A15_contig_688_3013 | 3172666 | 3175671 | - | GH3 |
| TC | A15_contig_688 | A15_contig_688_3014 | 3175805 | 3177361 | - | 2.A.2.3.6 |
| CAZyme | A15_contig_688 | A15_contig_688_3015 | 3177395 | 3179317 | - | GH2 |
| pfam | A15_contig_688 | A15_contig_688_3016 | 3179541 | 3180806 | - | HATPase_c_5 |
| TF | A15_contig_688 | A15_contig_688_3017 | 3180809 | 3181513 | - | LytTR |
| TC | A15_contig_688 | A15_contig_688_3018 | 3181741 | 3183780 | - | 1.B.52.2.2 |
| CAZyme | A15_contig_688 | A15_contig_688_3019 | 3183896 | 3184741 | - | CE4 |
Gene ID: A15_contig_688_3010
Type: TC
Location: 3169581 - 3171737 (-)
Type: TC
Location: 3169581 - 3171737 (-)
Gene ID: A15_contig_688_3011
Type: STP
Location: 3171886 - 3172104 (-)
Type: STP
Location: 3171886 - 3172104 (-)
Gene ID: A15_contig_688_3012
Type: STP
Location: 3172194 - 3172406 (-)
Type: STP
Location: 3172194 - 3172406 (-)
Gene ID: A15_contig_688_3013
Type: CAZyme
Location: 3172666 - 3175671 (-)
Type: CAZyme
Location: 3172666 - 3175671 (-)
Gene ID: A15_contig_688_3014
Type: TC
Location: 3175805 - 3177361 (-)
Type: TC
Location: 3175805 - 3177361 (-)
Gene ID: A15_contig_688_3015
Type: CAZyme
Location: 3177395 - 3179317 (-)
Type: CAZyme
Location: 3177395 - 3179317 (-)
Gene ID: A15_contig_688_3016
Type: pfam
Location: 3179541 - 3180806 (-)
Type: pfam
Location: 3179541 - 3180806 (-)
Gene ID: A15_contig_688_3017
Type: TF
Location: 3180809 - 3181513 (-)
Type: TF
Location: 3180809 - 3181513 (-)
Gene ID: A15_contig_688_3018
Type: TC
Location: 3181741 - 3183780 (-)
Type: TC
Location: 3181741 - 3183780 (-)
Gene ID: A15_contig_688_3019
Type: CAZyme
Location: 3183896 - 3184741 (-)
Type: CAZyme
Location: 3183896 - 3184741 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia inulinivorans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_688_3012 | vegetarian > omnivore | 1.40000 | 0.00079 |
| A15_contig_688_3012 | vegetarian > vegan | 1.36094 | 0.00181 |
| A15_contig_688_3013 | vegetarian > vegan | 1.36357 | 0.00181 |
| A15_contig_688_3018 | vegetarian > omnivore | 1.16728 | 0.00079 |