Cluster: A15.CMAG_2_CGC36
🧬 Cluster Details
- Gene Count: 25
- CAZyme Count: 4
- Substrate:
- Genome ID: A15.CMAG_2
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A15_contig_688 | A15_contig_688_2870 | 3019098 | 3020915 | - | 8.A.59.2.1 |
| STP | A15_contig_688 | A15_contig_688_2871 | 3020912 | 3022576 | - | SBP_bac_1 |
| NULL(UNKNOWN) | A15_contig_688 | A15_contig_688_2872 | 3022549 | 3022671 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A15_contig_688 | A15_contig_688_2873 | 3022801 | 3023637 | - | 3.A.1.1.34 |
| TC | A15_contig_688 | A15_contig_688_2874 | 3023649 | 3024623 | - | 3.A.1.1.23 |
| STP | A15_contig_688 | A15_contig_688_2875 | 3024752 | 3026152 | - | SBP_bac_1 |
| pfam | A15_contig_688 | A15_contig_688_2876 | 3026326 | 3027783 | + | DDE_Tnp_IS66 | DDE_Tnp_IS240 | rve_3 |
| CAZyme | A15_contig_688 | A15_contig_688_2877 | 3028342 | 3031503 | - | GH161 |
| CAZyme | A15_contig_688 | A15_contig_688_2878 | 3031535 | 3034258 | - | GH94 |
| CAZyme | A15_contig_688 | A15_contig_688_2879 | 3034357 | 3036237 | - | GH55_1 |
| pfam | A15_contig_688 | A15_contig_688_2880 | 3036271 | 3037524 | - | Acetyltransf_9 | SCP2_2 |
| STP | A15_contig_688 | A15_contig_688_2881 | 3037602 | 3039212 | - | SBP_bac_1 |
| TC | A15_contig_688 | A15_contig_688_2882 | 3039313 | 3040218 | - | 3.A.1.1.9 |
| TC | A15_contig_688 | A15_contig_688_2883 | 3040231 | 3041184 | - | 3.A.1.1.29 |
| TF | A15_contig_688 | A15_contig_688_2884 | 3041378 | 3042160 | - | HTH_AraC | HTH_AraC |
| STP | A15_contig_688 | A15_contig_688_2885 | 3042132 | 3043505 | - | SBP_bac_1 |
| TC | A15_contig_688 | A15_contig_688_2886 | 3043530 | 3045329 | - | 9.B.33.1.1 |
| pfam | A15_contig_688 | A15_contig_688_2887 | 3045465 | 3046880 | - | PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | A15_contig_688 | A15_contig_688_2888 | 3046904 | 3049312 | - | GH94 |
| pfam | A15_contig_688 | A15_contig_688_2889 | 3049475 | 3050623 | - | Radical_SAM | HemN_C |
| sulfatase | A15_contig_688 | A15_contig_688_2890 | 3050628 | 3052439 | - | S1_97 |
| TC | A15_contig_688 | A15_contig_688_2891 | 3052577 | 3054166 | - | 3.A.1.5.11 |
| TC | A15_contig_688 | A15_contig_688_2892 | 3054208 | 3055032 | - | 3.A.1.5.20 |
| TC | A15_contig_688 | A15_contig_688_2893 | 3055116 | 3056078 | - | 3.A.1.5.20 |
| TC | A15_contig_688 | A15_contig_688_2894 | 3056133 | 3057707 | - | 3.A.1.5.20 |
Gene ID: A15_contig_688_2870
Type: TC
Location: 3019098 - 3020915 (-)
Type: TC
Location: 3019098 - 3020915 (-)
Gene ID: A15_contig_688_2871
Type: STP
Location: 3020912 - 3022576 (-)
Type: STP
Location: 3020912 - 3022576 (-)
Gene ID: A15_contig_688_2872
Type:
Location: 3022549 - 3022671 (-)
Type:
Location: 3022549 - 3022671 (-)
Gene ID: A15_contig_688_2873
Type: TC
Location: 3022801 - 3023637 (-)
Type: TC
Location: 3022801 - 3023637 (-)
Gene ID: A15_contig_688_2874
Type: TC
Location: 3023649 - 3024623 (-)
Type: TC
Location: 3023649 - 3024623 (-)
Gene ID: A15_contig_688_2875
Type: STP
Location: 3024752 - 3026152 (-)
Type: STP
Location: 3024752 - 3026152 (-)
Gene ID: A15_contig_688_2876
Type: pfam
Location: 3026326 - 3027783 (+)
Type: pfam
Location: 3026326 - 3027783 (+)
Gene ID: A15_contig_688_2877
Type: CAZyme
Location: 3028342 - 3031503 (-)
Type: CAZyme
Location: 3028342 - 3031503 (-)
Gene ID: A15_contig_688_2878
Type: CAZyme
Location: 3031535 - 3034258 (-)
Type: CAZyme
Location: 3031535 - 3034258 (-)
Gene ID: A15_contig_688_2879
Type: CAZyme
Location: 3034357 - 3036237 (-)
Type: CAZyme
Location: 3034357 - 3036237 (-)
Gene ID: A15_contig_688_2880
Type: pfam
Location: 3036271 - 3037524 (-)
Type: pfam
Location: 3036271 - 3037524 (-)
Gene ID: A15_contig_688_2881
Type: STP
Location: 3037602 - 3039212 (-)
Type: STP
Location: 3037602 - 3039212 (-)
Gene ID: A15_contig_688_2882
Type: TC
Location: 3039313 - 3040218 (-)
Type: TC
Location: 3039313 - 3040218 (-)
Gene ID: A15_contig_688_2883
Type: TC
Location: 3040231 - 3041184 (-)
Type: TC
Location: 3040231 - 3041184 (-)
Gene ID: A15_contig_688_2884
Type: TF
Location: 3041378 - 3042160 (-)
Type: TF
Location: 3041378 - 3042160 (-)
Gene ID: A15_contig_688_2885
Type: STP
Location: 3042132 - 3043505 (-)
Type: STP
Location: 3042132 - 3043505 (-)
Gene ID: A15_contig_688_2886
Type: TC
Location: 3043530 - 3045329 (-)
Type: TC
Location: 3043530 - 3045329 (-)
Gene ID: A15_contig_688_2887
Type: pfam
Location: 3045465 - 3046880 (-)
Type: pfam
Location: 3045465 - 3046880 (-)
Gene ID: A15_contig_688_2888
Type: CAZyme
Location: 3046904 - 3049312 (-)
Type: CAZyme
Location: 3046904 - 3049312 (-)
Gene ID: A15_contig_688_2889
Type: pfam
Location: 3049475 - 3050623 (-)
Type: pfam
Location: 3049475 - 3050623 (-)
Gene ID: A15_contig_688_2890
Type: sulfatase
Location: 3050628 - 3052439 (-)
Type: sulfatase
Location: 3050628 - 3052439 (-)
Gene ID: A15_contig_688_2891
Type: TC
Location: 3052577 - 3054166 (-)
Type: TC
Location: 3052577 - 3054166 (-)
Gene ID: A15_contig_688_2892
Type: TC
Location: 3054208 - 3055032 (-)
Type: TC
Location: 3054208 - 3055032 (-)
Gene ID: A15_contig_688_2893
Type: TC
Location: 3055116 - 3056078 (-)
Type: TC
Location: 3055116 - 3056078 (-)
Gene ID: A15_contig_688_2894
Type: TC
Location: 3056133 - 3057707 (-)
Type: TC
Location: 3056133 - 3057707 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia inulinivorans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_688_2870 | vegetarian > vegan | 1.29239 | 0.00181 |
| A15_contig_688_2873 | vegetarian > vegan | 1.47193 | 0.00181 |
| A15_contig_688_2874 | vegetarian > vegan | 1.29038 | 0.00181 |
| A15_contig_688_2877 | vegetarian > vegan | 1.21289 | 0.00181 |