Cluster: A15.CMAG_2_CGC3
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate: alpha-glucan
- Genome ID: A15.CMAG_2
- CGC Family ID: CGCFAM_00106
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A15_contig_688 | A15_contig_688_98 | 118851 | 119573 | - | 3.A.1.25.5 |
| pfam | A15_contig_688 | A15_contig_688_99 | 119629 | 120126 | - | DUF6106 |
| CAZyme | A15_contig_688 | A15_contig_688_100 | 120259 | 122280 | + | GH133 |
| STP | A15_contig_688 | A15_contig_688_101 | 122650 | 123291 | + | SBP_bac_1 |
| TC | A15_contig_688 | A15_contig_688_102 | 123376 | 125106 | - | 1.B.52.2.1 |
| CAZyme | A15_contig_688 | A15_contig_688_103 | 125272 | 127014 | - | GH13_36 |
| TC | A15_contig_688 | A15_contig_688_104 | 127135 | 128010 | - | 3.A.1.1.27 |
| TC | A15_contig_688 | A15_contig_688_105 | 128010 | 129383 | - | 3.A.1.1.27 |
| pfam | A15_contig_688 | A15_contig_688_106 | 129494 | 130783 | - | SBP_bac_1 | SBP_bac_8 |
| CAZyme | A15_contig_688 | A15_contig_688_107 | 130851 | 132347 | - | GH77 |
Gene ID: A15_contig_688_98
Type: TC
Location: 118851 - 119573 (-)
Type: TC
Location: 118851 - 119573 (-)
Gene ID: A15_contig_688_99
Type: pfam
Location: 119629 - 120126 (-)
Type: pfam
Location: 119629 - 120126 (-)
Gene ID: A15_contig_688_100
Type: CAZyme
Location: 120259 - 122280 (+)
Type: CAZyme
Location: 120259 - 122280 (+)
Gene ID: A15_contig_688_101
Type: STP
Location: 122650 - 123291 (+)
Type: STP
Location: 122650 - 123291 (+)
Gene ID: A15_contig_688_102
Type: TC
Location: 123376 - 125106 (-)
Type: TC
Location: 123376 - 125106 (-)
Gene ID: A15_contig_688_103
Type: CAZyme
Location: 125272 - 127014 (-)
Type: CAZyme
Location: 125272 - 127014 (-)
Gene ID: A15_contig_688_104
Type: TC
Location: 127135 - 128010 (-)
Type: TC
Location: 127135 - 128010 (-)
Gene ID: A15_contig_688_105
Type: TC
Location: 128010 - 129383 (-)
Type: TC
Location: 128010 - 129383 (-)
Gene ID: A15_contig_688_106
Type: pfam
Location: 129494 - 130783 (-)
Type: pfam
Location: 129494 - 130783 (-)
Gene ID: A15_contig_688_107
Type: CAZyme
Location: 130851 - 132347 (-)
Type: CAZyme
Location: 130851 - 132347 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia inulinivorans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_688_98 | vegetarian > omnivore | 1.03786 | 0.00079 |
| A15_contig_688_101 | vegetarian > vegan | 1.26751 | 0.00181 |
| A15_contig_688_102 | vegetarian > vegan | 1.26903 | 0.00181 |
| A15_contig_688_103 | vegetarian > vegan | 1.00990 | 0.00181 |