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Cluster: A15.CMAG_2_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC A15_contig_688 A15_contig_688_2294 2419193 2420452 - 2.A.49.9.2
TC A15_contig_688 A15_contig_688_2295 2420888 2422312 + 3.A.1.1.45
TC A15_contig_688 A15_contig_688_2296 2422400 2423242 + 3.A.1.1.45
TC A15_contig_688 A15_contig_688_2297 2423242 2424114 + 3.A.1.1.45
TF A15_contig_688 A15_contig_688_2298 2424190 2425200 + LacI
CAZyme A15_contig_688 A15_contig_688_2299 2425235 2426758 + GH77
pfam A15_contig_688 A15_contig_688_2300 2426981 2427691 + RelA_SpoT
TC A15_contig_688 A15_contig_688_2301 2427688 2429034 + 2.A.66.1.32
TF A15_contig_688 A15_contig_688_2302 2429414 2429773 + HTH_5
STP A15_contig_688 A15_contig_688_2303 2429793 2430011 + HMA
TC A15_contig_688 A15_contig_688_2304 2430067 2431983 + 3.A.3.6.10
TC A15_contig_688 A15_contig_688_2305 2432140 2433222 + 9.B.34.1.3
TC A15_contig_688 A15_contig_688_2306 2433356 2434846 + 1.B.52.2.2
pfam A15_contig_688 A15_contig_688_2307 2434870 2435664 - S6PP | Hydrolase_3
TC A15_contig_688 A15_contig_688_2308 2435828 2437132 + 1.B.52.2.1
pfam A15_contig_688 A15_contig_688_2309 2437291 2438883 + Prismane
TC A15_contig_688 A15_contig_688_2310 2439042 2440406 + 2.A.66.1.32
TC A15_contig_688 A15_contig_688_2311 2440411 2441757 + 2.A.66.1.25
Gene ID: A15_contig_688_2294
Type: TC
Location: 2419193 - 2420452 (-)
Gene ID: A15_contig_688_2295
Type: TC
Location: 2420888 - 2422312 (+)
Gene ID: A15_contig_688_2296
Type: TC
Location: 2422400 - 2423242 (+)
Gene ID: A15_contig_688_2297
Type: TC
Location: 2423242 - 2424114 (+)
Gene ID: A15_contig_688_2298
Type: TF
Location: 2424190 - 2425200 (+)
Gene ID: A15_contig_688_2299
Type: CAZyme
Location: 2425235 - 2426758 (+)
Gene ID: A15_contig_688_2300
Type: pfam
Location: 2426981 - 2427691 (+)
Gene ID: A15_contig_688_2301
Type: TC
Location: 2427688 - 2429034 (+)
Gene ID: A15_contig_688_2302
Type: TF
Location: 2429414 - 2429773 (+)
Gene ID: A15_contig_688_2303
Type: STP
Location: 2429793 - 2430011 (+)
Gene ID: A15_contig_688_2304
Type: TC
Location: 2430067 - 2431983 (+)
Gene ID: A15_contig_688_2305
Type: TC
Location: 2432140 - 2433222 (+)
Gene ID: A15_contig_688_2306
Type: TC
Location: 2433356 - 2434846 (+)
Gene ID: A15_contig_688_2307
Type: pfam
Location: 2434870 - 2435664 (-)
Gene ID: A15_contig_688_2308
Type: TC
Location: 2435828 - 2437132 (+)
Gene ID: A15_contig_688_2309
Type: pfam
Location: 2437291 - 2438883 (+)
Gene ID: A15_contig_688_2310
Type: TC
Location: 2439042 - 2440406 (+)
Gene ID: A15_contig_688_2311
Type: TC
Location: 2440411 - 2441757 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
A15_contig_688_2295 vegetarian > omnivore 1.06917 0.00079
A15_contig_688_2295 vegetarian > vegan 1.05453 0.00181
A15_contig_688_2297 vegetarian > omnivore 1.02529 0.00079
A15_contig_688_2301 vegetarian > vegan 1.31590 0.00181
A15_contig_688_2306 vegetarian > vegan 1.17506 0.00181
A15_contig_688_2310 vegetarian > vegan 1.07028 0.00181

🧭 Explore Read Mapping of CGC

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