Cluster: A15.CMAG_2_CGC25
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: A15.CMAG_2
- CGC Family ID: CGCFAM_04328
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A15_contig_688 | A15_contig_688_1637 | 1707578 | 1708495 | + | 3.A.1.1.10 |
| TC | A15_contig_688 | A15_contig_688_1638 | 1708510 | 1709412 | + | 3.A.1.1.29 |
| STP | A15_contig_688 | A15_contig_688_1639 | 1709422 | 1711170 | + | HATPase_c |
| TF | A15_contig_688 | A15_contig_688_1640 | 1711167 | 1712771 | + | HTH_AraC |
| CAZyme | A15_contig_688 | A15_contig_688_1641 | 1712768 | 1714981 | + | GH3 |
Gene ID: A15_contig_688_1637
Type: TC
Location: 1707578 - 1708495 (+)
Type: TC
Location: 1707578 - 1708495 (+)
Gene ID: A15_contig_688_1638
Type: TC
Location: 1708510 - 1709412 (+)
Type: TC
Location: 1708510 - 1709412 (+)
Gene ID: A15_contig_688_1639
Type: STP
Location: 1709422 - 1711170 (+)
Type: STP
Location: 1709422 - 1711170 (+)
Gene ID: A15_contig_688_1640
Type: TF
Location: 1711167 - 1712771 (+)
Type: TF
Location: 1711167 - 1712771 (+)
Gene ID: A15_contig_688_1641
Type: CAZyme
Location: 1712768 - 1714981 (+)
Type: CAZyme
Location: 1712768 - 1714981 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia inulinivorans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_688_1638 | vegan > omnivore | 1.10690 | 0.02624 |
| A15_contig_688_1639 | vegan > omnivore | 1.34156 | 0.02045 |
| A15_contig_688_1639 | vegetarian > omnivore | 1.34946 | 0.00079 |
| A15_contig_688_1640 | vegetarian > omnivore | 1.36206 | 0.00079 |