Cluster: A15.CMAG_2_CGC23
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: A15.CMAG_2
- CGC Family ID: CGCFAM_00002
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A15_contig_688 | A15_contig_688_1530 | 1579295 | 1580746 | + | 9.B.18.1.2 |
| CAZyme | A15_contig_688 | A15_contig_688_1531 | 1580750 | 1581904 | + | GT4 |
| pfam | A15_contig_688 | A15_contig_688_1532 | 1581930 | 1582571 | + | Hexapep |
| CAZyme | A15_contig_688 | A15_contig_688_1533 | 1582544 | 1583530 | + | GT2 |
| TC | A15_contig_688 | A15_contig_688_1534 | 1583555 | 1585003 | + | 2.A.66.2.16 |
Gene ID: A15_contig_688_1530
Type: TC
Location: 1579295 - 1580746 (+)
Type: TC
Location: 1579295 - 1580746 (+)
Gene ID: A15_contig_688_1531
Type: CAZyme
Location: 1580750 - 1581904 (+)
Type: CAZyme
Location: 1580750 - 1581904 (+)
Gene ID: A15_contig_688_1532
Type: pfam
Location: 1581930 - 1582571 (+)
Type: pfam
Location: 1581930 - 1582571 (+)
Gene ID: A15_contig_688_1533
Type: CAZyme
Location: 1582544 - 1583530 (+)
Type: CAZyme
Location: 1582544 - 1583530 (+)
Gene ID: A15_contig_688_1534
Type: TC
Location: 1583555 - 1585003 (+)
Type: TC
Location: 1583555 - 1585003 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia inulinivorans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_688_1531 | vegan > omnivore | 1.82840 | 0.03784 |
| A15_contig_688_1531 | vegetarian > omnivore | 2.26825 | 0.00079 |
| A15_contig_688_1533 | vegetarian > omnivore | 2.44490 | 0.00079 |
| A15_contig_688_1533 | vegetarian > vegan | 1.31143 | 0.00181 |
| A15_contig_688_1534 | vegetarian > omnivore | 1.57169 | 0.00079 |