Cluster: A15.CMAG_2_CGC20
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 3
- Substrate:
- Genome ID: A15.CMAG_2
- CGC Family ID: CGCFAM_00002
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A15_contig_688 | A15_contig_688_1485 | 1529786 | 1530049 | + | 8.A.8.1.6 |
| CAZyme | A15_contig_688 | A15_contig_688_1486 | 1530095 | 1531084 | + | GT2 |
| CAZyme | A15_contig_688 | A15_contig_688_1487 | 1531084 | 1532301 | + | GT4 |
| CAZyme | A15_contig_688 | A15_contig_688_1488 | 1532298 | 1533002 | + | GT2 |
Gene ID: A15_contig_688_1485
Type: TC
Location: 1529786 - 1530049 (+)
Type: TC
Location: 1529786 - 1530049 (+)
Gene ID: A15_contig_688_1486
Type: CAZyme
Location: 1530095 - 1531084 (+)
Type: CAZyme
Location: 1530095 - 1531084 (+)
Gene ID: A15_contig_688_1487
Type: CAZyme
Location: 1531084 - 1532301 (+)
Type: CAZyme
Location: 1531084 - 1532301 (+)
Gene ID: A15_contig_688_1488
Type: CAZyme
Location: 1532298 - 1533002 (+)
Type: CAZyme
Location: 1532298 - 1533002 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia inulinivorans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_688_1486 | vegetarian > vegan | 1.52366 | 0.00181 |
| A15_contig_688_1488 | vegetarian > vegan | 1.20253 | 0.00181 |