Cluster: A15.CMAG_2_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A15.CMAG_2
- CGC Family ID: CGCFAM_04325
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A15_contig_688 | A15_contig_688_1268 | 1307227 | 1308345 | - | GT28 |
| NULL(UNKNOWN) | A15_contig_688 | A15_contig_688_1269 | 1308453 | 1308884 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | A15_contig_688 | A15_contig_688_1270 | 1308974 | 1309576 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A15_contig_688 | A15_contig_688_1271 | 1309624 | 1311225 | + | 9.B.34.1.4 |
Gene ID: A15_contig_688_1268
Type: CAZyme
Location: 1307227 - 1308345 (-)
Type: CAZyme
Location: 1307227 - 1308345 (-)
Gene ID: A15_contig_688_1269
Type:
Location: 1308453 - 1308884 (+)
Type:
Location: 1308453 - 1308884 (+)
Gene ID: A15_contig_688_1270
Type:
Location: 1308974 - 1309576 (+)
Type:
Location: 1308974 - 1309576 (+)
Gene ID: A15_contig_688_1271
Type: TC
Location: 1309624 - 1311225 (+)
Type: TC
Location: 1309624 - 1311225 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia inulinivorans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_688_1268 | vegetarian > vegan | 1.19319 | 0.00181 |
| A15_contig_688_1270 | vegetarian > vegan | 1.26394 | 0.00181 |
| A15_contig_688_1271 | vegetarian > vegan | 1.17293 | 0.00181 |