Cluster: A15.CMAG_2_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A15.CMAG_2
- CGC Family ID: CGCFAM_02379
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A15_contig_688 | A15_contig_688_1138 | 1190158 | 1192974 | + | GH3 |
| NULL(UNKNOWN) | A15_contig_688 | A15_contig_688_1139 | 1192952 | 1193401 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A15_contig_688 | A15_contig_688_1140 | 1193835 | 1194995 | + | MFS_1 |
| TC | A15_contig_688 | A15_contig_688_1141 | 1195039 | 1196067 | - | 2.A.98.1.4 |
Gene ID: A15_contig_688_1138
Type: CAZyme
Location: 1190158 - 1192974 (+)
Type: CAZyme
Location: 1190158 - 1192974 (+)
Gene ID: A15_contig_688_1139
Type:
Location: 1192952 - 1193401 (+)
Type:
Location: 1192952 - 1193401 (+)
Gene ID: A15_contig_688_1140
Type: pfam
Location: 1193835 - 1194995 (+)
Type: pfam
Location: 1193835 - 1194995 (+)
Gene ID: A15_contig_688_1141
Type: TC
Location: 1195039 - 1196067 (-)
Type: TC
Location: 1195039 - 1196067 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia inulinivorans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_688_1138 | vegan > omnivore | 1.91975 | 0.03784 |
| A15_contig_688_1138 | vegetarian > omnivore | 3.31033 | 0.00079 |
| A15_contig_688_1138 | vegetarian > vegan | 1.39058 | 0.00181 |
| A15_contig_688_1139 | vegan > omnivore | 1.69001 | 0.03539 |
| A15_contig_688_1139 | vegetarian > omnivore | 1.83660 | 0.00079 |