Cluster: A15.CMAG_2_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: A15.CMAG_2
- CGC Family ID: CGCFAM_06668
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A15_contig_688 | A15_contig_688_699 | 706937 | 710620 | - | 3.A.1.137.2 |
| TC | A15_contig_688 | A15_contig_688_700 | 710630 | 711334 | - | 3.A.1.122.14 |
| CAZyme | A15_contig_688 | A15_contig_688_701 | 711596 | 713314 | - | CBM34 | GH13_20 |
| STP | A15_contig_688 | A15_contig_688_702 | 713344 | 714261 | - | GGDEF | PAS |
| pfam | A15_contig_688 | A15_contig_688_703 | 714520 | 714804 | - | Y1_Tnp |
| CAZyme | A15_contig_688 | A15_contig_688_704 | 715448 | 717130 | - | GH13_31 |
Gene ID: A15_contig_688_699
Type: TC
Location: 706937 - 710620 (-)
Type: TC
Location: 706937 - 710620 (-)
Gene ID: A15_contig_688_700
Type: TC
Location: 710630 - 711334 (-)
Type: TC
Location: 710630 - 711334 (-)
Gene ID: A15_contig_688_701
Type: CAZyme
Location: 711596 - 713314 (-)
Type: CAZyme
Location: 711596 - 713314 (-)
Gene ID: A15_contig_688_702
Type: STP
Location: 713344 - 714261 (-)
Type: STP
Location: 713344 - 714261 (-)
Gene ID: A15_contig_688_703
Type: pfam
Location: 714520 - 714804 (-)
Type: pfam
Location: 714520 - 714804 (-)
Gene ID: A15_contig_688_704
Type: CAZyme
Location: 715448 - 717130 (-)
Type: CAZyme
Location: 715448 - 717130 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia inulinivorans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_688_702 | vegetarian > omnivore | 1.41105 | 0.00079 |
| A15_contig_688_702 | vegetarian > vegan | 1.98699 | 0.00181 |