Cluster: A15.CMAG_2_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: A15.CMAG_2
- CGC Family ID: CGCFAM_06667
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A15_contig_688 | A15_contig_688_593 | 605635 | 606474 | - | 3.A.1.1.34 |
| TC | A15_contig_688 | A15_contig_688_594 | 606467 | 607363 | - | 3.A.1.1.20 |
| TC | A15_contig_688 | A15_contig_688_595 | 607444 | 608763 | - | 3.A.1.1.40 |
| CAZyme | A15_contig_688 | A15_contig_688_596 | 608822 | 610654 | - | GH20 |
| TF | A15_contig_688 | A15_contig_688_597 | 610846 | 611706 | - | HTH_6 |
| CAZyme | A15_contig_688 | A15_contig_688_598 | 611717 | 612721 | - | CE2 |
Gene ID: A15_contig_688_593
Type: TC
Location: 605635 - 606474 (-)
Type: TC
Location: 605635 - 606474 (-)
Gene ID: A15_contig_688_594
Type: TC
Location: 606467 - 607363 (-)
Type: TC
Location: 606467 - 607363 (-)
Gene ID: A15_contig_688_595
Type: TC
Location: 607444 - 608763 (-)
Type: TC
Location: 607444 - 608763 (-)
Gene ID: A15_contig_688_596
Type: CAZyme
Location: 608822 - 610654 (-)
Type: CAZyme
Location: 608822 - 610654 (-)
Gene ID: A15_contig_688_597
Type: TF
Location: 610846 - 611706 (-)
Type: TF
Location: 610846 - 611706 (-)
Gene ID: A15_contig_688_598
Type: CAZyme
Location: 611717 - 612721 (-)
Type: CAZyme
Location: 611717 - 612721 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia inulinivorans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_688_593 | vegetarian > vegan | 2.00846 | 0.00181 |
| A15_contig_688_593 | vegetarian > omnivore | 1.97821 | 0.00079 |
| A15_contig_688_594 | vegetarian > omnivore | 2.97457 | 0.00079 |
| A15_contig_688_594 | vegetarian > vegan | 1.72849 | 0.00181 |
| A15_contig_688_595 | vegetarian > omnivore | 3.85399 | 0.00079 |
| A15_contig_688_595 | vegetarian > vegan | 1.70992 | 0.00181 |
| A15_contig_688_596 | vegetarian > vegan | 2.46479 | 0.00181 |
| A15_contig_688_596 | vegetarian > omnivore | 3.76878 | 0.00079 |
| A15_contig_688_597 | vegetarian > vegan | 3.18068 | 0.00181 |
| A15_contig_688_597 | vegetarian > omnivore | 3.88824 | 0.00079 |
| A15_contig_688_598 | vegetarian > vegan | 3.82331 | 0.00181 |
| A15_contig_688_598 | vegetarian > omnivore | 3.17334 | 0.00079 |