Cluster: A129.bin_3_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: A129.bin_3
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_887 | 878794 | 880221 | + | CE4 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_888 | 880463 | 882793 | + | 3.A.3.23.2 |
| STP | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_889 | 882900 | 885872 | - | EAL | GGDEF | dCache_1 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_890 | 885894 | 887324 | - | SBP_bac_8 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_891 | 887428 | 889284 | - | 3.A.1.135.5 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_892 | 889286 | 891004 | - | 3.A.1.135.5 |
Gene ID: A129_contig_815_corr_2_np12_887
Type: CAZyme
Location: 878794 - 880221 (+)
Type: CAZyme
Location: 878794 - 880221 (+)
Gene ID: A129_contig_815_corr_2_np12_888
Type: TC
Location: 880463 - 882793 (+)
Type: TC
Location: 880463 - 882793 (+)
Gene ID: A129_contig_815_corr_2_np12_889
Type: STP
Location: 882900 - 885872 (-)
Type: STP
Location: 882900 - 885872 (-)
Gene ID: A129_contig_815_corr_2_np12_890
Type: pfam
Location: 885894 - 887324 (-)
Type: pfam
Location: 885894 - 887324 (-)
Gene ID: A129_contig_815_corr_2_np12_891
Type: TC
Location: 887428 - 889284 (-)
Type: TC
Location: 887428 - 889284 (-)
Gene ID: A129_contig_815_corr_2_np12_892
Type: TC
Location: 889286 - 891004 (-)
Type: TC
Location: 889286 - 891004 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.