Cluster: A129.bin_3_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: A129.bin_3
- CGC Family ID: CGCFAM_01864
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_870 | 860019 | 861434 | - | GH77 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_871 | 861436 | 862077 | - | LUD_dom |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_872 | 862128 | 864140 | - | 9.A.8.1.6 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_873 | 864130 | 864366 | - | 9.A.8.1.6 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_874 | 864377 | 865177 | - | Lactamase_B | Lactamase_B_2 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_875 | 865278 | 867749 | - | 3.A.3.6.10 |
Gene ID: A129_contig_815_corr_2_np12_870
Type: CAZyme
Location: 860019 - 861434 (-)
Type: CAZyme
Location: 860019 - 861434 (-)
Gene ID: A129_contig_815_corr_2_np12_871
Type: pfam
Location: 861436 - 862077 (-)
Type: pfam
Location: 861436 - 862077 (-)
Gene ID: A129_contig_815_corr_2_np12_872
Type: TC
Location: 862128 - 864140 (-)
Type: TC
Location: 862128 - 864140 (-)
Gene ID: A129_contig_815_corr_2_np12_873
Type: TC
Location: 864130 - 864366 (-)
Type: TC
Location: 864130 - 864366 (-)
Gene ID: A129_contig_815_corr_2_np12_874
Type: pfam
Location: 864377 - 865177 (-)
Type: pfam
Location: 864377 - 865177 (-)
Gene ID: A129_contig_815_corr_2_np12_875
Type: TC
Location: 865278 - 867749 (-)
Type: TC
Location: 865278 - 867749 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.