Cluster: A129.bin_3_CGC63
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: beta-glucan
- Genome ID: A129.bin_3
- CGC Family ID: CGCFAM_00042
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3620 | 3684726 | 3685040 | + | 4.A.3.2.7 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3621 | 3685043 | 3685348 | + | 4.A.3.2.6 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3622 | 3685352 | 3686695 | + | 4.A.3.2.3 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3623 | 3686697 | 3686981 | + | Glyco_hydro_1 |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3624 | 3686982 | 3688151 | + | GH1 |
Gene ID: A129_contig_815_corr_2_np12_3620
Type: TC
Location: 3684726 - 3685040 (+)
Type: TC
Location: 3684726 - 3685040 (+)
Gene ID: A129_contig_815_corr_2_np12_3621
Type: TC
Location: 3685043 - 3685348 (+)
Type: TC
Location: 3685043 - 3685348 (+)
Gene ID: A129_contig_815_corr_2_np12_3622
Type: TC
Location: 3685352 - 3686695 (+)
Type: TC
Location: 3685352 - 3686695 (+)
Gene ID: A129_contig_815_corr_2_np12_3623
Type: pfam
Location: 3686697 - 3686981 (+)
Type: pfam
Location: 3686697 - 3686981 (+)
Gene ID: A129_contig_815_corr_2_np12_3624
Type: CAZyme
Location: 3686982 - 3688151 (+)
Type: CAZyme
Location: 3686982 - 3688151 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.