Cluster: A129.bin_3_CGC60
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A129.bin_3
- CGC Family ID: CGCFAM_00006
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3495 | 3559338 | 3561131 | + | 9.B.18.1.3 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3496 | 3561131 | 3562231 | + | Glyco_trans_1_4 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3497 | 3562228 | 3562806 | + | Hexapep | Hexapep_2 | Hexapep_2 |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3498 | 3562826 | 3563929 | + | GT4 |
Gene ID: A129_contig_815_corr_2_np12_3495
Type: TC
Location: 3559338 - 3561131 (+)
Type: TC
Location: 3559338 - 3561131 (+)
Gene ID: A129_contig_815_corr_2_np12_3496
Type: pfam
Location: 3561131 - 3562231 (+)
Type: pfam
Location: 3561131 - 3562231 (+)
Gene ID: A129_contig_815_corr_2_np12_3497
Type: pfam
Location: 3562228 - 3562806 (+)
Type: pfam
Location: 3562228 - 3562806 (+)
Gene ID: A129_contig_815_corr_2_np12_3498
Type: CAZyme
Location: 3562826 - 3563929 (+)
Type: CAZyme
Location: 3562826 - 3563929 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.