Cluster: A129.bin_3_CGC54
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: A129.bin_3
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3282 | 3318639 | 3319226 | + | 2.A.115.2.14 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3283 | 3319409 | 3320116 | + | S6PP | Hydrolase_3 |
| TF | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3284 | 3320132 | 3320800 | + | Crp |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3285 | 3320974 | 3322317 | + | GH1 |
| TF | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3286 | 3322360 | 3323382 | + | LacI |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3287 | 3323541 | 3329054 | + | CBM32 | CBM32 | CBM32 | CBM32 | CBM32 | PL8_3 |
| STP | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3288 | 3329090 | 3331516 | - | Pyr_redox_2 | Rhodanese |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3289 | 3332159 | 3332686 | - | 2.A.51.1.5 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3290 | 3332680 | 3333249 | - | Chromate_transp |
| TF | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3291 | 3333354 | 3334220 | + | HTH_1 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3292 | 3334444 | 3336072 | + | 2.A.53.3.9 |
Gene ID: A129_contig_815_corr_2_np12_3282
Type: TC
Location: 3318639 - 3319226 (+)
Type: TC
Location: 3318639 - 3319226 (+)
Gene ID: A129_contig_815_corr_2_np12_3283
Type: pfam
Location: 3319409 - 3320116 (+)
Type: pfam
Location: 3319409 - 3320116 (+)
Gene ID: A129_contig_815_corr_2_np12_3284
Type: TF
Location: 3320132 - 3320800 (+)
Type: TF
Location: 3320132 - 3320800 (+)
Gene ID: A129_contig_815_corr_2_np12_3285
Type: CAZyme
Location: 3320974 - 3322317 (+)
Type: CAZyme
Location: 3320974 - 3322317 (+)
Gene ID: A129_contig_815_corr_2_np12_3286
Type: TF
Location: 3322360 - 3323382 (+)
Type: TF
Location: 3322360 - 3323382 (+)
Gene ID: A129_contig_815_corr_2_np12_3287
Type: CAZyme
Location: 3323541 - 3329054 (+)
Type: CAZyme
Location: 3323541 - 3329054 (+)
Gene ID: A129_contig_815_corr_2_np12_3288
Type: STP
Location: 3329090 - 3331516 (-)
Type: STP
Location: 3329090 - 3331516 (-)
Gene ID: A129_contig_815_corr_2_np12_3289
Type: TC
Location: 3332159 - 3332686 (-)
Type: TC
Location: 3332159 - 3332686 (-)
Gene ID: A129_contig_815_corr_2_np12_3290
Type: pfam
Location: 3332680 - 3333249 (-)
Type: pfam
Location: 3332680 - 3333249 (-)
Gene ID: A129_contig_815_corr_2_np12_3291
Type: TF
Location: 3333354 - 3334220 (+)
Type: TF
Location: 3333354 - 3334220 (+)
Gene ID: A129_contig_815_corr_2_np12_3292
Type: TC
Location: 3334444 - 3336072 (+)
Type: TC
Location: 3334444 - 3336072 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.