Cluster: A129.bin_3_CGC51
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: A129.bin_3
- CGC Family ID: CGCFAM_04136
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3187 | 3227290 | 3227595 | + | 4.A.3.2.8 |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3188 | 3227598 | 3229025 | + | GH1 |
| TF | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3189 | 3229152 | 3229988 | + | HTH_6 |
| TF | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3190 | 3230341 | 3231198 | + | HTH_6 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_3191 | 3231325 | 3232683 | + | 4.A.3.2.9 |
Gene ID: A129_contig_815_corr_2_np12_3187
Type: TC
Location: 3227290 - 3227595 (+)
Type: TC
Location: 3227290 - 3227595 (+)
Gene ID: A129_contig_815_corr_2_np12_3188
Type: CAZyme
Location: 3227598 - 3229025 (+)
Type: CAZyme
Location: 3227598 - 3229025 (+)
Gene ID: A129_contig_815_corr_2_np12_3189
Type: TF
Location: 3229152 - 3229988 (+)
Type: TF
Location: 3229152 - 3229988 (+)
Gene ID: A129_contig_815_corr_2_np12_3190
Type: TF
Location: 3230341 - 3231198 (+)
Type: TF
Location: 3230341 - 3231198 (+)
Gene ID: A129_contig_815_corr_2_np12_3191
Type: TC
Location: 3231325 - 3232683 (+)
Type: TC
Location: 3231325 - 3232683 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.