Cluster: A129.bin_3_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: A129.bin_3
- CGC Family ID: CGCFAM_06611
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_668 | 661374 | 662045 | + | 3.A.1.125.2 |
| TF | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_669 | 662066 | 662941 | - | HTH_6 |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_670 | 663093 | 664505 | + | GH1 |
| STP | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_671 | 664642 | 664857 | + | FeoA |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_672 | 664880 | 665101 | + | 9.A.8.1.6 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_673 | 665129 | 667312 | + | 9.A.8.1.6 |
Gene ID: A129_contig_815_corr_2_np12_668
Type: TC
Location: 661374 - 662045 (+)
Type: TC
Location: 661374 - 662045 (+)
Gene ID: A129_contig_815_corr_2_np12_669
Type: TF
Location: 662066 - 662941 (-)
Type: TF
Location: 662066 - 662941 (-)
Gene ID: A129_contig_815_corr_2_np12_670
Type: CAZyme
Location: 663093 - 664505 (+)
Type: CAZyme
Location: 663093 - 664505 (+)
Gene ID: A129_contig_815_corr_2_np12_671
Type: STP
Location: 664642 - 664857 (+)
Type: STP
Location: 664642 - 664857 (+)
Gene ID: A129_contig_815_corr_2_np12_672
Type: TC
Location: 664880 - 665101 (+)
Type: TC
Location: 664880 - 665101 (+)
Gene ID: A129_contig_815_corr_2_np12_673
Type: TC
Location: 665129 - 667312 (+)
Type: TC
Location: 665129 - 667312 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.