Cluster: A129.bin_3_CGC48
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: A129.bin_3
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2902 | 2952929 | 2953621 | + | 3.A.1.128.3 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2903 | 2953611 | 2955182 | + | ABC_export |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2904 | 2955430 | 2956782 | + | 2.A.66.1.33 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2905 | 2956919 | 2957347 | + | HbpS-like |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2906 | 2957383 | 2958414 | + | GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2907 | 2958731 | 2960035 | + | 4.A.3.2.9 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2908 | 2960146 | 2960586 | + | Flavodoxin_4 |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2909 | 2960699 | 2962177 | + | GH1 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2910 | 2962584 | 2963891 | + | 4.A.3.2.9 |
| NULL(UNKNOWN) | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2911 | 2963907 | 2964182 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2912 | 2964298 | 2965149 | + | HTH_6 |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2913 | 2965275 | 2966744 | + | GH1 |
Gene ID: A129_contig_815_corr_2_np12_2902
Type: TC
Location: 2952929 - 2953621 (+)
Type: TC
Location: 2952929 - 2953621 (+)
Gene ID: A129_contig_815_corr_2_np12_2903
Type: pfam
Location: 2953611 - 2955182 (+)
Type: pfam
Location: 2953611 - 2955182 (+)
Gene ID: A129_contig_815_corr_2_np12_2904
Type: TC
Location: 2955430 - 2956782 (+)
Type: TC
Location: 2955430 - 2956782 (+)
Gene ID: A129_contig_815_corr_2_np12_2905
Type: pfam
Location: 2956919 - 2957347 (+)
Type: pfam
Location: 2956919 - 2957347 (+)
Gene ID: A129_contig_815_corr_2_np12_2906
Type: pfam
Location: 2957383 - 2958414 (+)
Type: pfam
Location: 2957383 - 2958414 (+)
Gene ID: A129_contig_815_corr_2_np12_2907
Type: TC
Location: 2958731 - 2960035 (+)
Type: TC
Location: 2958731 - 2960035 (+)
Gene ID: A129_contig_815_corr_2_np12_2908
Type: pfam
Location: 2960146 - 2960586 (+)
Type: pfam
Location: 2960146 - 2960586 (+)
Gene ID: A129_contig_815_corr_2_np12_2909
Type: CAZyme
Location: 2960699 - 2962177 (+)
Type: CAZyme
Location: 2960699 - 2962177 (+)
Gene ID: A129_contig_815_corr_2_np12_2910
Type: TC
Location: 2962584 - 2963891 (+)
Type: TC
Location: 2962584 - 2963891 (+)
Gene ID: A129_contig_815_corr_2_np12_2911
Type:
Location: 2963907 - 2964182 (+)
Type:
Location: 2963907 - 2964182 (+)
Gene ID: A129_contig_815_corr_2_np12_2912
Type: TF
Location: 2964298 - 2965149 (+)
Type: TF
Location: 2964298 - 2965149 (+)
Gene ID: A129_contig_815_corr_2_np12_2913
Type: CAZyme
Location: 2965275 - 2966744 (+)
Type: CAZyme
Location: 2965275 - 2966744 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.