Cluster: A129.bin_3_CGC45
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate: host glycan/beta-glucan
- Genome ID: A129.bin_3
- CGC Family ID: CGCFAM_00020
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2771 | 2818104 | 2819390 | + | 4.A.3.2.2 |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2772 | 2819392 | 2820822 | + | GH1 |
| NULL(UNKNOWN) | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2773 | 2820847 | 2822565 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2774 | 2822825 | 2824930 | + | 4.A.1.1.9 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2775 | 2824947 | 2825771 | + | PRD | PRD | CAT_RBD |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2776 | 2825994 | 2826983 | + | 4.A.6.1.15 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2777 | 2827009 | 2827824 | + | 4.A.6.1.15 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2778 | 2827845 | 2828762 | + | 4.A.6.1.15 |
Gene ID: A129_contig_815_corr_2_np12_2771
Type: TC
Location: 2818104 - 2819390 (+)
Type: TC
Location: 2818104 - 2819390 (+)
Gene ID: A129_contig_815_corr_2_np12_2772
Type: CAZyme
Location: 2819392 - 2820822 (+)
Type: CAZyme
Location: 2819392 - 2820822 (+)
Gene ID: A129_contig_815_corr_2_np12_2773
Type:
Location: 2820847 - 2822565 (+)
Type:
Location: 2820847 - 2822565 (+)
Gene ID: A129_contig_815_corr_2_np12_2774
Type: TC
Location: 2822825 - 2824930 (+)
Type: TC
Location: 2822825 - 2824930 (+)
Gene ID: A129_contig_815_corr_2_np12_2775
Type: pfam
Location: 2824947 - 2825771 (+)
Type: pfam
Location: 2824947 - 2825771 (+)
Gene ID: A129_contig_815_corr_2_np12_2776
Type: TC
Location: 2825994 - 2826983 (+)
Type: TC
Location: 2825994 - 2826983 (+)
Gene ID: A129_contig_815_corr_2_np12_2777
Type: TC
Location: 2827009 - 2827824 (+)
Type: TC
Location: 2827009 - 2827824 (+)
Gene ID: A129_contig_815_corr_2_np12_2778
Type: TC
Location: 2827845 - 2828762 (+)
Type: TC
Location: 2827845 - 2828762 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A129_contig_815_corr_2_np12_2776 | vegan > omnivore | 3.08935 | 0.00565 |
| A129_contig_815_corr_2_np12_2777 | vegan > omnivore | 1.57293 | 0.00565 |