Cluster: A129.bin_3_CGC43
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: A129.bin_3
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2710 | 2749948 | 2753634 | + | GH73 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2711 | 2753722 | 2754198 | - | PAP2 | PAP2_3 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2712 | 2754338 | 2755702 | + | 9.B.18.1.2 |
| NULL(UNKNOWN) | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2713 | 2755805 | 2757544 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2714 | 2757566 | 2758678 | + | 3.A.1.103.4 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2715 | 2758681 | 2759451 | + | 3.A.1.103.4 |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2716 | 2759466 | 2761652 | + | GT2 | GT2 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2717 | 2761642 | 2763849 | + | DUF2142 |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2718 | 2763866 | 2764594 | + | GT2 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2719 | 2764584 | 2764931 | + | DUF2304 |
| NULL(UNKNOWN) | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2720 | 2764921 | 2766153 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2721 | 2766183 | 2767109 | + | GT2 |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2722 | 2767126 | 2768100 | + | GT8 |
Gene ID: A129_contig_815_corr_2_np12_2710
Type: CAZyme
Location: 2749948 - 2753634 (+)
Type: CAZyme
Location: 2749948 - 2753634 (+)
Gene ID: A129_contig_815_corr_2_np12_2711
Type: pfam
Location: 2753722 - 2754198 (-)
Type: pfam
Location: 2753722 - 2754198 (-)
Gene ID: A129_contig_815_corr_2_np12_2712
Type: TC
Location: 2754338 - 2755702 (+)
Type: TC
Location: 2754338 - 2755702 (+)
Gene ID: A129_contig_815_corr_2_np12_2713
Type:
Location: 2755805 - 2757544 (+)
Type:
Location: 2755805 - 2757544 (+)
Gene ID: A129_contig_815_corr_2_np12_2714
Type: TC
Location: 2757566 - 2758678 (+)
Type: TC
Location: 2757566 - 2758678 (+)
Gene ID: A129_contig_815_corr_2_np12_2715
Type: TC
Location: 2758681 - 2759451 (+)
Type: TC
Location: 2758681 - 2759451 (+)
Gene ID: A129_contig_815_corr_2_np12_2716
Type: CAZyme
Location: 2759466 - 2761652 (+)
Type: CAZyme
Location: 2759466 - 2761652 (+)
Gene ID: A129_contig_815_corr_2_np12_2717
Type: pfam
Location: 2761642 - 2763849 (+)
Type: pfam
Location: 2761642 - 2763849 (+)
Gene ID: A129_contig_815_corr_2_np12_2718
Type: CAZyme
Location: 2763866 - 2764594 (+)
Type: CAZyme
Location: 2763866 - 2764594 (+)
Gene ID: A129_contig_815_corr_2_np12_2719
Type: pfam
Location: 2764584 - 2764931 (+)
Type: pfam
Location: 2764584 - 2764931 (+)
Gene ID: A129_contig_815_corr_2_np12_2720
Type:
Location: 2764921 - 2766153 (+)
Type:
Location: 2764921 - 2766153 (+)
Gene ID: A129_contig_815_corr_2_np12_2721
Type: CAZyme
Location: 2766183 - 2767109 (+)
Type: CAZyme
Location: 2766183 - 2767109 (+)
Gene ID: A129_contig_815_corr_2_np12_2722
Type: CAZyme
Location: 2767126 - 2768100 (+)
Type: CAZyme
Location: 2767126 - 2768100 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A129_contig_815_corr_2_np12_2712 | vegan > omnivore | 2.62598 | 0.00565 |