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Cluster: A129.bin_3_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_2612 2641534 2643450 + 9.B.34.1.2
pfam A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_2613 2643736 2645025 - HATPase_c_5
TF A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_2614 2645018 2645716 - LytTR
TC A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_2615 2646071 2646550 - 4.A.1.2.6
TF A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_2616 2646607 2647371 + HTH_6
TF A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_2617 2647371 2648123 + HTH_6
TC A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_2618 2648141 2649667 - 4.A.1.1.3
CAZyme A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_2619 2649688 2651013 - GH4
Gene ID: A129_contig_815_corr_2_np12_2612
Type: TC
Location: 2641534 - 2643450 (+)
Gene ID: A129_contig_815_corr_2_np12_2613
Type: pfam
Location: 2643736 - 2645025 (-)
Gene ID: A129_contig_815_corr_2_np12_2614
Type: TF
Location: 2645018 - 2645716 (-)
Gene ID: A129_contig_815_corr_2_np12_2615
Type: TC
Location: 2646071 - 2646550 (-)
Gene ID: A129_contig_815_corr_2_np12_2616
Type: TF
Location: 2646607 - 2647371 (+)
Gene ID: A129_contig_815_corr_2_np12_2617
Type: TF
Location: 2647371 - 2648123 (+)
Gene ID: A129_contig_815_corr_2_np12_2618
Type: TC
Location: 2648141 - 2649667 (-)
Gene ID: A129_contig_815_corr_2_np12_2619
Type: CAZyme
Location: 2649688 - 2651013 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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