Cluster: A129.bin_3_CGC41
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: A129.bin_3
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2560 | 2586401 | 2587744 | - | 1.A.26.1.3 |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2561 | 2588051 | 2589526 | - | CE20 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2562 | 2589507 | 2590916 | - | 4.A.3.2.2 |
| TF | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2563 | 2591106 | 2591879 | + | HTH_6 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2564 | 2591909 | 2594443 | - | 9.B.34.1.3 |
| NULL(UNKNOWN) | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2565 | 2594675 | 2595046 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2566 | 2595068 | 2596036 | + | HD |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2567 | 2596084 | 2596944 | - | 2.A.115.1.1 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2568 | 2596941 | 2597675 | - | 9.B.158.1.1 |
Gene ID: A129_contig_815_corr_2_np12_2560
Type: TC
Location: 2586401 - 2587744 (-)
Type: TC
Location: 2586401 - 2587744 (-)
Gene ID: A129_contig_815_corr_2_np12_2561
Type: CAZyme
Location: 2588051 - 2589526 (-)
Type: CAZyme
Location: 2588051 - 2589526 (-)
Gene ID: A129_contig_815_corr_2_np12_2562
Type: TC
Location: 2589507 - 2590916 (-)
Type: TC
Location: 2589507 - 2590916 (-)
Gene ID: A129_contig_815_corr_2_np12_2563
Type: TF
Location: 2591106 - 2591879 (+)
Type: TF
Location: 2591106 - 2591879 (+)
Gene ID: A129_contig_815_corr_2_np12_2564
Type: TC
Location: 2591909 - 2594443 (-)
Type: TC
Location: 2591909 - 2594443 (-)
Gene ID: A129_contig_815_corr_2_np12_2565
Type:
Location: 2594675 - 2595046 (+)
Type:
Location: 2594675 - 2595046 (+)
Gene ID: A129_contig_815_corr_2_np12_2566
Type: STP
Location: 2595068 - 2596036 (+)
Type: STP
Location: 2595068 - 2596036 (+)
Gene ID: A129_contig_815_corr_2_np12_2567
Type: TC
Location: 2596084 - 2596944 (-)
Type: TC
Location: 2596084 - 2596944 (-)
Gene ID: A129_contig_815_corr_2_np12_2568
Type: TC
Location: 2596941 - 2597675 (-)
Type: TC
Location: 2596941 - 2597675 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.