Cluster: A129.bin_3_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A129.bin_3
- CGC Family ID: CGCFAM_00851
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_623 | 617871 | 618692 | + | 3.A.1.104.1 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_624 | 618702 | 619529 | + | 3.A.1.104.2 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_625 | 619539 | 619925 | + | CTP_transf_like |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_626 | 619934 | 621004 | + | GT2 |
Gene ID: A129_contig_815_corr_2_np12_623
Type: TC
Location: 617871 - 618692 (+)
Type: TC
Location: 617871 - 618692 (+)
Gene ID: A129_contig_815_corr_2_np12_624
Type: TC
Location: 618702 - 619529 (+)
Type: TC
Location: 618702 - 619529 (+)
Gene ID: A129_contig_815_corr_2_np12_625
Type: pfam
Location: 619539 - 619925 (+)
Type: pfam
Location: 619539 - 619925 (+)
Gene ID: A129_contig_815_corr_2_np12_626
Type: CAZyme
Location: 619934 - 621004 (+)
Type: CAZyme
Location: 619934 - 621004 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A129_contig_815_corr_2_np12_623 | vegan > omnivore | 18.36370 | 0.00565 |
| A129_contig_815_corr_2_np12_623 | vegetarian > omnivore | 19.13415 | 0.02973 |
| A129_contig_815_corr_2_np12_625 | vegan > omnivore | 3.36595 | 0.00565 |