Cluster: A129.bin_3_CGC36
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: host glycan/beta-glucan
- Genome ID: A129.bin_3
- CGC Family ID: CGCFAM_00012
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2392 | 2413556 | 2414887 | - | 4.A.3.2.2 |
| TF | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2393 | 2415138 | 2417042 | + | Mga |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2394 | 2417159 | 2417614 | - | LacAB_rpiB |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2395 | 2417630 | 2419096 | - | GH1 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_2396 | 2419133 | 2419432 | - | 4.A.3.2.8 |
Gene ID: A129_contig_815_corr_2_np12_2392
Type: TC
Location: 2413556 - 2414887 (-)
Type: TC
Location: 2413556 - 2414887 (-)
Gene ID: A129_contig_815_corr_2_np12_2393
Type: TF
Location: 2415138 - 2417042 (+)
Type: TF
Location: 2415138 - 2417042 (+)
Gene ID: A129_contig_815_corr_2_np12_2394
Type: pfam
Location: 2417159 - 2417614 (-)
Type: pfam
Location: 2417159 - 2417614 (-)
Gene ID: A129_contig_815_corr_2_np12_2395
Type: CAZyme
Location: 2417630 - 2419096 (-)
Type: CAZyme
Location: 2417630 - 2419096 (-)
Gene ID: A129_contig_815_corr_2_np12_2396
Type: TC
Location: 2419133 - 2419432 (-)
Type: TC
Location: 2419133 - 2419432 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A129_contig_815_corr_2_np12_2394 | vegan > omnivore | 18.69036 | 0.00565 |
| A129_contig_815_corr_2_np12_2396 | vegan > omnivore | 1.44849 | 0.00565 |