Cluster: A129.bin_3_CGC30
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: A129.bin_3
- CGC Family ID: CGCFAM_04184
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1925 | 1927199 | 1928704 | - | GH1 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1926 | 1928707 | 1930038 | - | 4.A.3.2.9 |
| TF | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1927 | 1930334 | 1932256 | - | HTH_11 | Mga |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1928 | 1933271 | 1934110 | - | GH1 |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1929 | 1934052 | 1934744 | - | GH1 |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1930 | 1934745 | 1936178 | - | GH1 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1931 | 1936232 | 1937521 | - | 4.A.3.2.2 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1932 | 1937544 | 1937843 | - | 4.A.3.2.2 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1933 | 1937863 | 1938174 | - | 4.A.3.2.7 |
Gene ID: A129_contig_815_corr_2_np12_1925
Type: CAZyme
Location: 1927199 - 1928704 (-)
Type: CAZyme
Location: 1927199 - 1928704 (-)
Gene ID: A129_contig_815_corr_2_np12_1926
Type: TC
Location: 1928707 - 1930038 (-)
Type: TC
Location: 1928707 - 1930038 (-)
Gene ID: A129_contig_815_corr_2_np12_1927
Type: TF
Location: 1930334 - 1932256 (-)
Type: TF
Location: 1930334 - 1932256 (-)
Gene ID: A129_contig_815_corr_2_np12_1928
Type: CAZyme
Location: 1933271 - 1934110 (-)
Type: CAZyme
Location: 1933271 - 1934110 (-)
Gene ID: A129_contig_815_corr_2_np12_1929
Type: CAZyme
Location: 1934052 - 1934744 (-)
Type: CAZyme
Location: 1934052 - 1934744 (-)
Gene ID: A129_contig_815_corr_2_np12_1930
Type: CAZyme
Location: 1934745 - 1936178 (-)
Type: CAZyme
Location: 1934745 - 1936178 (-)
Gene ID: A129_contig_815_corr_2_np12_1931
Type: TC
Location: 1936232 - 1937521 (-)
Type: TC
Location: 1936232 - 1937521 (-)
Gene ID: A129_contig_815_corr_2_np12_1932
Type: TC
Location: 1937544 - 1937843 (-)
Type: TC
Location: 1937544 - 1937843 (-)
Gene ID: A129_contig_815_corr_2_np12_1933
Type: TC
Location: 1937863 - 1938174 (-)
Type: TC
Location: 1937863 - 1938174 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.