Cluster: A129.bin_3_CGC28
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: A129.bin_3
- CGC Family ID: CGCFAM_00204
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1870 | 1856448 | 1857296 | - | 3.A.1.149.1 |
| TF | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1871 | 1857300 | 1857671 | - | GntR |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1872 | 1857797 | 1864489 | - | CBM6 | GH3 | GH30_3 |
Gene ID: A129_contig_815_corr_2_np12_1870
Type: TC
Location: 1856448 - 1857296 (-)
Type: TC
Location: 1856448 - 1857296 (-)
Gene ID: A129_contig_815_corr_2_np12_1871
Type: TF
Location: 1857300 - 1857671 (-)
Type: TF
Location: 1857300 - 1857671 (-)
Gene ID: A129_contig_815_corr_2_np12_1872
Type: CAZyme
Location: 1857797 - 1864489 (-)
Type: CAZyme
Location: 1857797 - 1864489 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A129_contig_815_corr_2_np12_1872 | vegan > omnivore | 3.00519 | 0.00565 |