Cluster: A129.bin_3_CGC24
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: A129.bin_3
- CGC Family ID: CGCFAM_00007
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1763 | 1735495 | 1736922 | - | 2.A.66.2.23 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1764 | 1736915 | 1737940 | - | Glycos_transf_2 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1765 | 1737990 | 1739177 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1766 | 1739309 | 1740220 | - | GT2 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1767 | 1740377 | 1741426 | - | Wzy_C |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1768 | 1741475 | 1742584 | - | GT4 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1769 | 1742676 | 1743494 | - | LicD |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1770 | 1743736 | 1744872 | - | GT4 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1771 | 1744872 | 1745489 | - | Hexapep | Hexapep | Hexapep | PglD_N |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1772 | 1745479 | 1746093 | - | 9.B.18.1.2 |
Gene ID: A129_contig_815_corr_2_np12_1763
Type: TC
Location: 1735495 - 1736922 (-)
Type: TC
Location: 1735495 - 1736922 (-)
Gene ID: A129_contig_815_corr_2_np12_1764
Type: pfam
Location: 1736915 - 1737940 (-)
Type: pfam
Location: 1736915 - 1737940 (-)
Gene ID: A129_contig_815_corr_2_np12_1765
Type: pfam
Location: 1737990 - 1739177 (-)
Type: pfam
Location: 1737990 - 1739177 (-)
Gene ID: A129_contig_815_corr_2_np12_1766
Type: CAZyme
Location: 1739309 - 1740220 (-)
Type: CAZyme
Location: 1739309 - 1740220 (-)
Gene ID: A129_contig_815_corr_2_np12_1767
Type: pfam
Location: 1740377 - 1741426 (-)
Type: pfam
Location: 1740377 - 1741426 (-)
Gene ID: A129_contig_815_corr_2_np12_1768
Type: CAZyme
Location: 1741475 - 1742584 (-)
Type: CAZyme
Location: 1741475 - 1742584 (-)
Gene ID: A129_contig_815_corr_2_np12_1769
Type: pfam
Location: 1742676 - 1743494 (-)
Type: pfam
Location: 1742676 - 1743494 (-)
Gene ID: A129_contig_815_corr_2_np12_1770
Type: CAZyme
Location: 1743736 - 1744872 (-)
Type: CAZyme
Location: 1743736 - 1744872 (-)
Gene ID: A129_contig_815_corr_2_np12_1771
Type: pfam
Location: 1744872 - 1745489 (-)
Type: pfam
Location: 1744872 - 1745489 (-)
Gene ID: A129_contig_815_corr_2_np12_1772
Type: TC
Location: 1745479 - 1746093 (-)
Type: TC
Location: 1745479 - 1746093 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.