Cluster: A129.bin_3_CGC22
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: A129.bin_3
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1741 | 1712446 | 1713801 | - | 2.A.66.1.45 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1742 | 1713975 | 1715177 | - | Ni_insertion |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1743 | 1715177 | 1715917 | - | AIRC |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1744 | 1715921 | 1716637 | - | 3.A.1.23.2 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1745 | 1716637 | 1717404 | - | CbiQ |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1746 | 1717397 | 1718401 | - | 3.A.1.23.5 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1747 | 1718459 | 1718878 | - | DUF3842 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1748 | 1718859 | 1719650 | - | NAD_synthase |
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1749 | 1719834 | 1720442 | - | GT51 |
Gene ID: A129_contig_815_corr_2_np12_1741
Type: TC
Location: 1712446 - 1713801 (-)
Type: TC
Location: 1712446 - 1713801 (-)
Gene ID: A129_contig_815_corr_2_np12_1742
Type: pfam
Location: 1713975 - 1715177 (-)
Type: pfam
Location: 1713975 - 1715177 (-)
Gene ID: A129_contig_815_corr_2_np12_1743
Type: pfam
Location: 1715177 - 1715917 (-)
Type: pfam
Location: 1715177 - 1715917 (-)
Gene ID: A129_contig_815_corr_2_np12_1744
Type: TC
Location: 1715921 - 1716637 (-)
Type: TC
Location: 1715921 - 1716637 (-)
Gene ID: A129_contig_815_corr_2_np12_1745
Type: pfam
Location: 1716637 - 1717404 (-)
Type: pfam
Location: 1716637 - 1717404 (-)
Gene ID: A129_contig_815_corr_2_np12_1746
Type: TC
Location: 1717397 - 1718401 (-)
Type: TC
Location: 1717397 - 1718401 (-)
Gene ID: A129_contig_815_corr_2_np12_1747
Type: pfam
Location: 1718459 - 1718878 (-)
Type: pfam
Location: 1718459 - 1718878 (-)
Gene ID: A129_contig_815_corr_2_np12_1748
Type: pfam
Location: 1718859 - 1719650 (-)
Type: pfam
Location: 1718859 - 1719650 (-)
Gene ID: A129_contig_815_corr_2_np12_1749
Type: CAZyme
Location: 1719834 - 1720442 (-)
Type: CAZyme
Location: 1719834 - 1720442 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A129_contig_815_corr_2_np12_1743 | vegan > omnivore | 5.52256 | 0.00565 |