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Cluster: A129.bin_3_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1697 1671490 1672824 - 2.A.66.1.33
TC A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1698 1672927 1673415 - 4.A.1.1.14
NULL(UNKNOWN) A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1699 1673428 1673919 - NULL(UNKNOWN)
[View Structural Homologs]
pfam A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1700 1673935 1674750 - Glyco_hydro_4C
CAZyme A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1701 1674752 1675255 - GH4
TC A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1702 1675272 1676861 - 4.A.1.1.8
pfam A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1703 1677041 1677688 - DUF4867
pfam A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1704 1677690 1678142 - LacAB_rpiB
TC A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1705 1678146 1678637 - 4.A.1.2.6
NULL(UNKNOWN) A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1706 1678647 1679582 - NULL(UNKNOWN)
[View Structural Homologs]
pfam A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1707 1679584 1680234 - Ribul_P_3_epim
TC A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1708 1680258 1681619 - 4.A.1.2.6
TF A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1709 1681908 1682924 + LacI
TF A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1710 1683027 1683818 - HTH_6
CAZyme A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1711 1683950 1685296 - GH4
pfam A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1712 1685447 1686418 - DUF4352
TC A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1713 1686899 1688647 + 9.B.34.1.2
TC A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1714 1688788 1690263 - 3.A.1.121.3
NULL(UNKNOWN) A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1715 1690481 1690801 - NULL(UNKNOWN)
[View Structural Homologs]
TF A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1716 1690883 1691893 - 0040266
TC A129_contig_815_corr_2_np12 A129_contig_815_corr_2_np12_1717 1691897 1692514 - 4.A.3.2.1
Gene ID: A129_contig_815_corr_2_np12_1697
Type: TC
Location: 1671490 - 1672824 (-)
Gene ID: A129_contig_815_corr_2_np12_1698
Type: TC
Location: 1672927 - 1673415 (-)
Gene ID: A129_contig_815_corr_2_np12_1699
Type:
Location: 1673428 - 1673919 (-)
Gene ID: A129_contig_815_corr_2_np12_1700
Type: pfam
Location: 1673935 - 1674750 (-)
Gene ID: A129_contig_815_corr_2_np12_1701
Type: CAZyme
Location: 1674752 - 1675255 (-)
Gene ID: A129_contig_815_corr_2_np12_1702
Type: TC
Location: 1675272 - 1676861 (-)
Gene ID: A129_contig_815_corr_2_np12_1703
Type: pfam
Location: 1677041 - 1677688 (-)
Gene ID: A129_contig_815_corr_2_np12_1704
Type: pfam
Location: 1677690 - 1678142 (-)
Gene ID: A129_contig_815_corr_2_np12_1705
Type: TC
Location: 1678146 - 1678637 (-)
Gene ID: A129_contig_815_corr_2_np12_1706
Type:
Location: 1678647 - 1679582 (-)
Gene ID: A129_contig_815_corr_2_np12_1707
Type: pfam
Location: 1679584 - 1680234 (-)
Gene ID: A129_contig_815_corr_2_np12_1708
Type: TC
Location: 1680258 - 1681619 (-)
Gene ID: A129_contig_815_corr_2_np12_1709
Type: TF
Location: 1681908 - 1682924 (+)
Gene ID: A129_contig_815_corr_2_np12_1710
Type: TF
Location: 1683027 - 1683818 (-)
Gene ID: A129_contig_815_corr_2_np12_1711
Type: CAZyme
Location: 1683950 - 1685296 (-)
Gene ID: A129_contig_815_corr_2_np12_1712
Type: pfam
Location: 1685447 - 1686418 (-)
Gene ID: A129_contig_815_corr_2_np12_1713
Type: TC
Location: 1686899 - 1688647 (+)
Gene ID: A129_contig_815_corr_2_np12_1714
Type: TC
Location: 1688788 - 1690263 (-)
Gene ID: A129_contig_815_corr_2_np12_1715
Type:
Location: 1690481 - 1690801 (-)
Gene ID: A129_contig_815_corr_2_np12_1716
Type: TF
Location: 1690883 - 1691893 (-)
Gene ID: A129_contig_815_corr_2_np12_1717
Type: TC
Location: 1691897 - 1692514 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
A129_contig_815_corr_2_np12_1704 vegan > omnivore 3.66773 0.00565

🧭 Explore Read Mapping of CGC

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