Cluster: A129.bin_3_CGC18
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: A129.bin_3
- CGC Family ID: CGCFAM_00092
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1558 | 1520008 | 1522161 | - | GH112 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1559 | 1522164 | 1523282 | - | 3.A.1.1.26 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1560 | 1523295 | 1523462 | - | DUF6903 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1561 | 1523474 | 1524349 | - | 3.A.1.1.18 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1562 | 1524364 | 1525260 | - | 3.A.1.1.21 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1563 | 1525322 | 1526671 | - | 3.A.1.1.21 |
| TF | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1564 | 1526855 | 1527697 | + | HTH_AraC | HTH_AraC |
| NULL(UNKNOWN) | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1565 | 1528326 | 1529447 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1566 | 1529444 | 1530133 | - | 3.A.1.32.2 |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1567 | 1530130 | 1531647 | - | 3.A.1.32.2 |
Gene ID: A129_contig_815_corr_2_np12_1558
Type: CAZyme
Location: 1520008 - 1522161 (-)
Type: CAZyme
Location: 1520008 - 1522161 (-)
Gene ID: A129_contig_815_corr_2_np12_1559
Type: TC
Location: 1522164 - 1523282 (-)
Type: TC
Location: 1522164 - 1523282 (-)
Gene ID: A129_contig_815_corr_2_np12_1560
Type: pfam
Location: 1523295 - 1523462 (-)
Type: pfam
Location: 1523295 - 1523462 (-)
Gene ID: A129_contig_815_corr_2_np12_1561
Type: TC
Location: 1523474 - 1524349 (-)
Type: TC
Location: 1523474 - 1524349 (-)
Gene ID: A129_contig_815_corr_2_np12_1562
Type: TC
Location: 1524364 - 1525260 (-)
Type: TC
Location: 1524364 - 1525260 (-)
Gene ID: A129_contig_815_corr_2_np12_1563
Type: TC
Location: 1525322 - 1526671 (-)
Type: TC
Location: 1525322 - 1526671 (-)
Gene ID: A129_contig_815_corr_2_np12_1564
Type: TF
Location: 1526855 - 1527697 (+)
Type: TF
Location: 1526855 - 1527697 (+)
Gene ID: A129_contig_815_corr_2_np12_1565
Type:
Location: 1528326 - 1529447 (-)
Type:
Location: 1528326 - 1529447 (-)
Gene ID: A129_contig_815_corr_2_np12_1566
Type: TC
Location: 1529444 - 1530133 (-)
Type: TC
Location: 1529444 - 1530133 (-)
Gene ID: A129_contig_815_corr_2_np12_1567
Type: TC
Location: 1530130 - 1531647 (-)
Type: TC
Location: 1530130 - 1531647 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.